Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004889 (narV) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004889 showshow history
Names
narV chlZ JW1460 ECK1459 b1465
Product
nitrate reductase Z subunit gamma
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1535937 1536617 681 227
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003816 (IPR003816 Nitrate reductase, gamma subunit) Apr 2008
Automated Process Approved IPR023234 (IPR023234 NarG-like domain) Jul 2018
Automated Process Approved IPR036197 (IPR036197 NarG-like superfamily) Jul 2018
Automated Process Approved PF02665 (PF02665 Nitrate reductase gamma subunit) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003816
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009325 nitrate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008940 nitrate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name narV Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW1460 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym chlZ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1459 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1465 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product nitrate reductase Z subunit gamma Published Annotation - EcoCyc Accession Number: EG10644
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name cryptic nitrate reductase 2 gamma subunit Published Annotation - Swiss-Prot Accession Number: P19316 Jan 2006
Person Uncurated alternate product name nitrate reductase 2, gamma subunit Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name nitrate reductase 2 (NRZ), gamma subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR003816 Nitrate reductase, gamma subunit Protein Sequence Similarity - InterPro Domain: IPR003816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02665 Nitrate reductase gamma subunit Protein Sequence Similarity - PFAM Model Name: PF02665
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036197 NarG-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036197
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR023234 NarG-like domain Protein Sequence Similarity - InterPro Domain: IPR023234
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.7.99.4 Published Annotation - Swiss-Prot Accession Number: P0AF32 Feb 2006
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10644 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AF32 Published Annotation - Swiss-Prot Accession Number: P0AF32 Jan 2006
Automated Process Approved db xref GeneID:946029 Published Annotation - Entrez Gene Database ID: 946029
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AF32 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787738 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004889 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74547.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003816
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009325 nitrate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008940 nitrate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003816
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003146 narV CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003331 narV CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0006388 narV CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003031 narV CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002281 narV CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002938 narV CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002816 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003992 narI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005473 narV CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001479 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010063 narV CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001440 narV CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002877 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007946 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005329 narV CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005094 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078015 narV CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001635 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001898 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005271 narV CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007959 narV CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001715 narV CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006086 narI2 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003333 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005453 narV CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009818 narV CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0007999 narV CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007067 narV CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006915 narV CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006942 narV CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011390 narV CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008056 narV CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008445 narV CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007033 narV CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007138 narV CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008793 narV CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026021 narV CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007982 narV CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006226 narI1 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001917 narV CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001374 narV CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001506 narV CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001781 narI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001773 narI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001735 narI CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001703 narI CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001583 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001708 narV CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132038 narV CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002052 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001690 narV CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001888 narV CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004669 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005756 narV CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001851 narV CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006033 narV CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004804 narV CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004688 narV CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004895 narV CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006120 narV CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005060 narV CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005110 narV CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004570 narV CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005192 narV CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006061 narV CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004723 narV CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001291 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001288 narV CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001723 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006308 narV CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005313 narV CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005781 narV CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005119 narV CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108092 narV CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001910 narV CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095205 narV CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007777 narV CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005761 narV CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007117 narV CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001905 narV CDS
Person Approved Go view Shigella sonnei 046 ADD-0001807 narV CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013420 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003881 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1530937 to 1541617
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004865yncI_1CDSpforward15305861531332Downstream
ABE-0285123yncIpseudogeneforward15305861531673Downstream
ABE-0004868yncI_2CDSpforward15313761531576Downstream
ABE-0285153is_elementforward15316721532962Downstream
ABE-0004872ydcCCDSforward15318161532952Downstream
ABE-0004875pptACDSforward15330521533285Downstream
ABE-0004877yddHCDScomplement15332821533851Downstream
ABE-0004882nhoACDSforward15340241534869Downstream
ABE-0285451repeat_regionforward15348831534957Downstream
ABE-0004886yddECDScomplement15349651535858Downstream
ABE-0004889narVCDScomplement15359371536617Matches
ABE-0004892narWCDScomplement15366141537309Overlaps Upstream
ABE-0285724matS12protein_bindforward15368071536819Upstream
ABE-0004896narYCDScomplement15373091538853Upstream
ABE-0004898narZCDScomplement15388501542590Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.