Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004892 (narW) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004892 showshow history
Names
narW chlZ JW1461 ECK1460 b1466
Product
putative nitrate reductase subunit chaperone
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1536614 1537309 696 232
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003765 (IPR003765 Nitrate reductase chaperone, NarJ) Apr 2008
Automated Process Approved IPR020945 (IPR020945 DMSO/Nitrate reductase chaperone) Jul 2018
Automated Process Approved IPR036411 (IPR036411 TorD-like superfamily) Jul 2018
Automated Process Approved PF02613 (PF02613 Nitrate reductase delta subunit) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0051131 chaperone-mediated protein complex assembly GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003765
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0009325 nitrate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0051082 unfolded protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003765
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008940 nitrate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name narW Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW1461 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym chlZ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1460 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1466 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative nitrate reductase subunit chaperone Published Annotation - EcoCyc Accession Number: EG10645
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name cryptic nitrate reductase 2 delta subunit Published Annotation - Swiss-Prot Accession Number: P19317 Jan 2006
Person Uncurated alternate product name nitrate reductase 2, delta subunit, assembly function Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name nitrate reductase 2 (NRZ), delta subunit (assembly subunit) Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR003765 Nitrate reductase chaperone, NarJ Protein Sequence Similarity - InterPro Domain: IPR003765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02613 Nitrate reductase delta subunit Protein Sequence Similarity - PFAM Model Name: PF02613
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036411 TorD-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036411
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020945 DMSO/Nitrate reductase chaperone Protein Sequence Similarity - InterPro Domain: IPR020945
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.7.99.4 Published Annotation - Swiss-Prot Accession Number: P19317 Feb 2006
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.4 (information transfer; protein related; chaperoning, folding) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10645 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004892 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946032 Published Annotation - Entrez Gene Database ID: 946032
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787739 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P19317 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P19317 Published Annotation - Swiss-Prot Accession Number: P19317 Jan 2005
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0006457 - protein folding Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74548.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0051131 chaperone-mediated protein complex assembly GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003765
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0009325 nitrate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0051082 unfolded protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR003765
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008940 nitrate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003765
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003234 narW CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003426 narW CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0006337 narW CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003065 narW CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002280 narW CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002937 narW CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002815 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003991 narW CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005474 narW CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001480 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010064 narW CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001441 narW CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002876 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007945 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005330 narW CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005093 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078016 narW CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001636 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001899 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005270 narW CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007960 narW CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001716 narW CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006087 narW CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003334 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005454 narW CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009819 narW CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008000 narW CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007066 narW CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006916 narW CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006941 narW CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011391 narW CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008057 narW CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008444 narW CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007032 narW CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007137 narW CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008792 narW CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026020 narW CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007981 narW CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006227 narW CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001916 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001375 narW CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001507 narW CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001780 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001774 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001734 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001704 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001584 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001707 narW CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132039 narW CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002051 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001691 narW CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001887 narW CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004670 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005757 narW CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001851 narV CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006034 narW CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004807 narW CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004691 narW CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004896 narW CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006119 narW CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005059 narW CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005109 narW CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004569 narW CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005191 narW CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006060 narW CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004724 narW CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001724 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006307 narW CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005314 narW CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005780 narW CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005118 narW CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108093 narW CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083204 narW pseudogene
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001909 narW CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095202 narW CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007778 narW CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005760 narW CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007116 narW CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001904 narW CDS
Person Approved Go view Shigella sonnei 046 ADD-0001806 narW CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013422 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003880 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1531614 to 1542309
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285123yncIpseudogeneforward15305861531673Downstream
ABE-0285153is_elementforward15316721532962Downstream
ABE-0004872ydcCCDSforward15318161532952Downstream
ABE-0004875pptACDSforward15330521533285Downstream
ABE-0004877yddHCDScomplement15332821533851Downstream
ABE-0004882nhoACDSforward15340241534869Downstream
ABE-0285451repeat_regionforward15348831534957Downstream
ABE-0004886yddECDScomplement15349651535858Downstream
ABE-0004889narVCDScomplement15359371536617Overlaps Downstream
ABE-0004892narWCDScomplement15366141537309Matches
ABE-0285724matS12protein_bindforward15368071536819Contained Within
ABE-0004896narYCDScomplement15373091538853Overlaps Upstream
ABE-0004898narZCDScomplement15388501542590Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.