Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004896 (narY) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004896 showshow history
Names
narY chlZ JW1462 ECK1461 b1467
Product
nitrate reductase Z subunit beta
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1537309 1538853 1545 515
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006547 (IPR006547 Nitrate reductase, beta subunit) Apr 2008
Automated Process Approved IPR001450 (IPR001450 (DEPRECATED) 4Fe-4S binding domain) Apr 2008
Automated Process Approved IPR029263 (IPR029263 Respiratory nitrate reductase beta, C-terminal) Jul 2018
Automated Process Approved IPR017896 (IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain) Jul 2018
Automated Process Approved PF14711 (PF14711 Respiratory nitrate reductase beta C-terminal) Jul 2018
Automated Process Approved PF13247 (PF13247 4Fe-4S dicluster domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006547
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0042126 nitrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009325 nitrate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008940 nitrate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name narY Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1461 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1462 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym chlZ Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b1467 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product nitrate reductase Z subunit beta Published Annotation - EcoCyc Accession Number: EG10647
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name cryptic nitrate reductase 2 beta subunit Published Annotation - Swiss-Prot Accession Number: P19318 Jan 2006
Person Uncurated alternate product name nitrate reductase 2, beta subunit Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name nitrate reductase 2 (NRZ), beta subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family PF14711 Respiratory nitrate reductase beta C-terminal Protein Sequence Similarity - PFAM Model Name: PF14711
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF13247 4Fe-4S dicluster domain Protein Sequence Similarity - PFAM Model Name: PF13247
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006547 Nitrate reductase, beta subunit Protein Sequence Similarity - InterPro Domain: IPR006547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Protein Sequence Similarity - InterPro Domain: IPR017896
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001450 (DEPRECATED) 4Fe-4S binding domain Protein Sequence Similarity - InterPro Domain: IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029263 Respiratory nitrate reductase beta, C-terminal Protein Sequence Similarity - InterPro Domain: IPR029263
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.7.99.4 Published Annotation - Swiss-Prot Accession Number: P19318 Feb 2006
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.4.2 (metabolism; energy production/transport; electron acceptor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10647 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946034 Published Annotation - Entrez Gene Database ID: 946034
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P19318 Published Annotation - Swiss-Prot Accession Number: P19318 Jan 2005
Automated Process Approved db xref GI:1787740 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P19318 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004896 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of narG ASAP:4119:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74549.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006547
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0042126 nitrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0009325 nitrate reductase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO molecular function GO:0009054 (DEPRECATED) electron acceptor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008940 nitrate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001765 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000056 narH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000077 narH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000104 narH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000040 narH CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002279 narY CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002936 narY CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001481 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001442 narY CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002875 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007944 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078017 narY CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001637 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001900 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001717 narY CDS
Person Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006088 narY CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006917 narY CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026019 narY CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007980 narY CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006228 narY CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001915 narY CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001376 narY CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001508 narY CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001779 narH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001775 narH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001733 narH CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001705 narH CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175838 narH CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001585 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001706 narY CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132040 narY CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001692 narY CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001847 narY CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001290 narY CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108094 narY CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083203 narY CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095199 narY CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0001903 narY CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0072991 narY pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0001805 narY CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1532309 to 1543853
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285153is_elementforward15316721532962Downstream
ABE-0004872ydcCCDSforward15318161532952Downstream
ABE-0004875pptACDSforward15330521533285Downstream
ABE-0004877yddHCDScomplement15332821533851Downstream
ABE-0004882nhoACDSforward15340241534869Downstream
ABE-0285451repeat_regionforward15348831534957Downstream
ABE-0004886yddECDScomplement15349651535858Downstream
ABE-0004889narVCDScomplement15359371536617Downstream
ABE-0004892narWCDScomplement15366141537309Overlaps Downstream
ABE-0285724matS12protein_bindforward15368071536819Downstream
ABE-0004896narYCDScomplement15373091538853Matches
ABE-0004898narZCDScomplement15388501542590Overlaps Upstream
ABE-0285452repeat_regionforward15426341542662Upstream
ABE-0004901narUCDScomplement15426721544060Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.