Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004912 (yddG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004912 showshow history
Names
yddG JW1469 ECK1467 b1473
Product
amino acid exporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1546288 1547169 882 294
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000620 (IPR000620 EamA domain) Apr 2008
Automated Process Approved PF00892 (PF00892 EamA-like transporter family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000620
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000620
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name yddG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1467 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1469 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1473 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product amino acid exporter Published Annotation - EcoCyc Accession Number: EG12713
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name predicted methyl viologen efflux pump Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name aromatic amino acid exporter Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name putative transmembrane protein Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR000620 EamA domain Protein Sequence Similarity - InterPro Domain: IPR000620
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00892 EamA-like transporter family Protein Sequence Similarity - PFAM Model Name: PF00892
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved comment The coordinates of yddG have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site predicted in EcoGene (EG12713), adding 19 codons to the N-terminus. Published Annotation in EcoGene - EG Number: EG12713
Reference: Escherichia coli K-12 MG1655 		Apr 2007
Automated Process Approved db xref EcoGene:EG12713 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P46136 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P46136 Published Annotation - Swiss-Prot Accession Number: P46136 Jan 2005
Automated Process Approved db xref GeneID:945942 Published Annotation - Entrez Gene Database ID: 945942
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:145693132 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004912 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAD13437.3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000620
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000620
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002002 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001592 yddG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001464 yddG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001521 yddG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001685 yddG CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002264 yddG CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002929 yddG CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002806 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0000592 yddG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003986 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005480 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001484 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010070 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001445 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002872 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007938 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005336 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005087 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078020 yddG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001643 yddG CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001905 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005264 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007966 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001720 yddG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006093 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003342 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005462 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009827 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008008 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007058 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006924 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006933 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011399 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008065 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008436 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007024 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007129 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008784 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026010 yddG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007977 yddG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006233 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001912 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001382 yddG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001514 yddG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001774 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001780 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001728 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001708 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175841 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001590 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001700 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132047 yddG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002043 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001695 yddG CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001873 yddG CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004694 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005768 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001452 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001825 yddG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006042 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004835 yddG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004716 yddG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004904 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006111 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005051 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005100 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004561 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005183 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006052 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004733 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001306 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001297 yddG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001736 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006299 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005322 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005772 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005110 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001898 yddG CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095180 yddG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007786 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005752 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007107 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003722 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264646 CDS
Person Approved Go view Shigella boydii 227 ADV-0001747 yddG CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001847 yddG CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072982 yddG CDS
Person Approved Go view Shigella flexneri 301 ABT-0088053 yddG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001864 yddG CDS
Person Approved Go view Shigella sonnei 046 ADD-0001796 yddG CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003728 VCA0835 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002249 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002192 yddG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000162 yddG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002896 yddG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001652 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234809 rhaT1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005132 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003494 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008208 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003944 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006383 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005872 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005859 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004211 CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030410 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006614 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000827 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003524 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004907 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007372 CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000760 yddG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000882 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004135 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013470 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003869 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20330mutantTn5 InsertionRequest the StrainABE-0004912yddGyddG::Tn5KAN-I-SceI at position 797 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1541288 to 1552169
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004898narZCDScomplement15388501542590Downstream
ABE-0285452repeat_regionforward15426341542662Downstream
ABE-0004901narUCDScomplement15426721544060Downstream
ABE-0004904yddJpseudogenecomplement15443841545438Downstream
ABE-0004906yddKpseudogenecomplement15454281545753Downstream
ABE-0004910yddLpseudogenecomplement15457511546028Downstream
ABE-0004912yddGCDScomplement15462881547169Matches
ABE-0004917fdnGCDSforward15474011550448Upstream
ABE-0004919fdnHCDSforward15504611551345Upstream
ABE-0004921fdnICDSforward15513381551991Upstream
ABE-0285453repeat_regionforward15520711552167Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.