Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004917 (fdnG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004917 showshow history
Names
fdnG JW1470 ECK1468 b1474
Product
formate dehydrogenase N subunit alpha
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1547401 1550448 3048 1016
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006963 (IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain) Apr 2008
Automated Process Approved IPR006656 (IPR006656 Molybdopterin oxidoreductase) Apr 2008
Automated Process Approved IPR006657 (IPR006657 Molybdopterin dinucleotide-binding domain) Apr 2008
Automated Process Approved IPR006655 (IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site) Apr 2008
Automated Process Approved IPR009010 (IPR009010 Aspartate decarboxylase-like domain superfamily) Apr 2008
Automated Process Approved IPR006443 (IPR006443 Formate dehydrogenase-N, alpha subunit) Apr 2008
Automated Process Approved IPR006311 (IPR006311 Twin-arginine translocation pathway, signal sequence) Apr 2008
Automated Process Approved PF01568 (PF01568 Molydopterin dinucleotide binding domain) Jul 2018
Automated Process Approved PF04879 (PF04879 Molybdopterin oxidoreductase Fe4S4 domain) Jul 2018
Automated Process Approved PF00384 (PF00384 Molybdopterin oxidoreductase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657, IPR006963, IPR006656
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0045333 cellular respiration GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006443
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006443
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006443
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0047111 formate dehydrogenase (cytochrome-c-553) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006443
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0043546 molybdopterin cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657, IPR006443
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006963
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008863 formate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006443
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fdnG Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW1470 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1468 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1474 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product formate dehydrogenase N subunit alpha Published Annotation - EcoCyc Accession Number: EG11227
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name formate dehydrogenase-N, alpha subunit, nitrate-inducible Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name formate dehydrogenase-N, nitrate-inducible, alpha subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Protein Sequence Similarity - InterPro Domain: IPR006963
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006656 Molybdopterin oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR006656
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01568 Molydopterin dinucleotide binding domain Protein Sequence Similarity - PFAM Model Name: PF01568
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF04879 Molybdopterin oxidoreductase Fe4S4 domain Protein Sequence Similarity - PFAM Model Name: PF04879
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00384 Molybdopterin oxidoreductase Protein Sequence Similarity - PFAM Model Name: PF00384
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006311 Twin-arginine translocation pathway, signal sequence Protein Sequence Similarity - InterPro Domain: IPR006311
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006443 Formate dehydrogenase-N, alpha subunit Protein Sequence Similarity - InterPro Domain: IPR006443
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006657 Molybdopterin dinucleotide-binding domain Protein Sequence Similarity - InterPro Domain: IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Protein Sequence Similarity - InterPro Domain: IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009010 Aspartate decarboxylase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009010
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.17.2.3 Published Annotation - Database Name: EC2GO: GO:0047111
Reference: Escherichia coli K-12 MG1655 		Dec 2019
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 1.17.5.3 Published Annotation - Swiss-Prot Accession Number: P24183
Reference: Escherichia coli K-12 		Dec 2019
Person Approved MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Approved MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P24183 Published Annotation - Swiss-Prot Accession Number: P24183 Jan 2005
Automated Process Approved db xref GeneID:946035 Published Annotation - Entrez Gene Database ID: 946035
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG11227 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:3868719 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004917 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P24183 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 1.3.7 metabolism; energy metabolism, carbon; anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 1.4.1 metabolism; energy production/transport; electron donor Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 7.1 location of gene products; cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note formate dehydrogenase-N, nitrate-inducible, alpha subunit; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAD13438.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 9.44
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated transl except (pos:1547986..1547988,aa:Sec) Experimental - PubMed ID: 1834669
Reference: Escherichia coli K-12 		Oct 2013
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0045333 cellular respiration GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006443
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657, IPR006963, IPR006656
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006655
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006443
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008863 formate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006443
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006443
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0047111 formate dehydrogenase (cytochrome-c-553) activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006443
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0043546 molybdopterin cofactor binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006657, IPR006443
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030151 molybdenum ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006657
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006963
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000043 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000042 fdnG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000060 fdnG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002966 fdnG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000028 fdnG CDS
Ortholog
Person Approved Go view Dickeya dadantii 3937 ABF-0019034 fdnG CDS
Person Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001487 CDS
Person Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001447 fdnG CDS
Person Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002870 CDS
Person Approved Go view Escherichia coli ATCC 8739 AEM-0007936 CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005085 fdnG CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078021 fdnG CDS
Person Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001646 fdnG CDS
Person Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001721 fdnG CDS
Person Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006095 fdnG CDS
Person Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006926 fdnG CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026009 fdnG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006234 fdnG CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0001383 fdnG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001515 fdnG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001773 fdnG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001727 fdnG CDS
Person Approved Go view Escherichia coli SE11 AFS-0001592 CDS
Person Approved Go view Escherichia coli SMS-3-5 AFT-0001699 fdnG CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132048 fdnG CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001696 fdnG CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061663 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002680 fdnG CDS
Person Uncurated Go view Salmonella Agona SL483 BBX-0005769 fdnG CDS
Person Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001453 fdnG CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0005567 fdnG CDS
Person Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006043 fdnG CDS
Person Uncurated Go view Salmonella Enteritidis P125109 BCF-0004838 fdnG CDS
Person Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004719 fdnG CDS
Person Uncurated Go view Salmonella Heidelberg SL476 BBV-0006109 fdnG CDS
Person Uncurated Go view Salmonella Newport SL254 BBQ-0006050 fdnG CDS
Person Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001307 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001298 fdnG CDS
Person Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001739 fdnG CDS
Person Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005771 fdnG CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108111 fdnG pseudogene
Person Approved Go view Salmonella Typhi Ty2 ABS-0083197 fdnG pseudogene
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095176 fdnG CDS
Person Approved Go view Shigella boydii 227 ADV-0001746 fdnG CDS
Person Approved Go view Shigella boydii BS512 ADJ-0007146 fdnG CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0005604 fdnG pseudogene
Person Approved Go view Shigella flexneri 2457T ABQ-0072981 fdnG CDS
Person Approved Go view Shigella flexneri 301 ABT-0088052 fdnG CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001863 fdnG CDS
Person Approved Go view Shigella sonnei 046 ADD-0001795 fdnG CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1542401 to 1555448
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004898narZCDScomplement15388501542590Upstream
ABE-0285452repeat_regionforward15426341542662Upstream
ABE-0004901narUCDScomplement15426721544060Upstream
ABE-0004904yddJpseudogenecomplement15443841545438Upstream
ABE-0004906yddKpseudogenecomplement15454281545753Upstream
ABE-0004910yddLpseudogenecomplement15457511546028Upstream
ABE-0004912yddGCDScomplement15462881547169Upstream
ABE-0004917fdnGCDSforward15474011550448Matches
ABE-0004919fdnHCDSforward15504611551345Downstream
ABE-0004921fdnICDSforward15513381551991Downstream
ABE-0285453repeat_regionforward15520711552167Downstream
ABE-0285454repeat_regionforward15522491552345Downstream
ABE-0004925yddMCDScomplement15523981552682Downstream
ABE-0004928adhPCDScomplement15528281553838Downstream
ABE-0004931maeACDScomplement15539721555669Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.