Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004919 (fdnH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004919 showshow history
Names
fdnH JW1471 ECK1469 b1475
Product
formate dehydrogenase N subunit beta
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1550461 1551345 885 295
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001450 (IPR001450 (DEPRECATED) 4Fe-4S binding domain) Apr 2008
Automated Process Approved IPR015246 (IPR015246 Formate dehydrogenase, transmembrane) Apr 2008
Automated Process Approved IPR006470 (IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria) Apr 2008
Automated Process Approved IPR017896 (IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain) Jul 2018
Automated Process Approved PF09163 (PF09163 Formate dehydrogenase N, transmembrane) Jul 2018
Automated Process Approved PF13247 (PF13247 4Fe-4S dicluster domain) Jul 2018
Automated Process Approved PF12800 (PF12800 4Fe-4S binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0015944 formate oxidation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006470
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0045333 cellular respiration GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006470
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008863 formate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fdnH Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW1471 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1469 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1475 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product formate dehydrogenase N subunit beta Published Annotation - EcoCyc Accession Number: EG11228
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name formate dehydrogenase-N, Fe-S beta subunit, nitrate-inducible Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR001450 (DEPRECATED) 4Fe-4S binding domain Protein Sequence Similarity - InterPro Domain: IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF13247 4Fe-4S dicluster domain Protein Sequence Similarity - PFAM Model Name: PF13247
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF12800 4Fe-4S binding domain Protein Sequence Similarity - PFAM Model Name: PF12800
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF09163 Formate dehydrogenase N, transmembrane Protein Sequence Similarity - PFAM Model Name: PF09163
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Protein Sequence Similarity - InterPro Domain: IPR017896
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria Protein Sequence Similarity - InterPro Domain: IPR006470
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015246 Formate dehydrogenase, transmembrane Protein Sequence Similarity - InterPro Domain: IPR015246
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 1.17.5.3 Published Annotation - EcoCyc Accession Number: EG11228
Reference: Escherichia coli K-12 MG1655 		Dec 2019
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11228 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:948794 Published Annotation - Entrez Gene Database ID: 948794
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AAJ3 Published Annotation - Swiss-Prot Accession Number: P0AAJ3 Jan 2006
Automated Process Approved db xref GI:1787749 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AAJ3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004919 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAD13439.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0015944 formate oxidation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006470
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0045333 cellular respiration GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0051536 iron-sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0051539 4 iron, 4 sulfur cluster binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006470
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0008863 formate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006470
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001450
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000041 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002682 fdnH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002659 fdnH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007843 fdnH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002614 fdnH CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001149 fdxH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003126 fdxH CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002262 fdnH CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002927 fdnH_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007566 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019033 fdnH CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001513 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002803 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003983 fdnH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005483 fdnH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001488 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010073 fdxH CDS
Person Approved Go view Escherichia coli APEC O1 (APEC) AEG-0005231 fdnH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0005111 fdnH CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007935 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005339 fdnH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005084 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078023 fdnH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001647 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001908 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005261 fdnH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007969 fdnH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001722 fdnH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006096 fdnH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003344 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005465 fdnH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009830 fdnH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008010 fdnH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007055 fdnH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006927 fdnH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006930 fdnH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011402 fdnH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008068 fdnH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008433 fdnH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007021 fdnH CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007126 fdnH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008781 fdnH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026008 fdnH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007973 fdnH_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006235 fdnH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001909 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001384 fdnH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001516 fdnH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001772 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001783 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001726 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001711 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175845 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001593 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001698 fdnH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132049 fdnH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002041 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001698 fdnH CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001416 fdxH CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001871 fdnH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000028 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005935 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000240 FdnH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061662 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000808 fdnH CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000381 fdnH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004143 fdnH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006006 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005770 fdnH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001454 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001823 fdnH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006044 fdnH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004842 fdnH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004726 fdnH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004907 fdnH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006108 fdnH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005048 fdnH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005097 fdnH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004558 fdnH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005180 fdnH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006049 fdnH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004736 fdnH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001308 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001299 fdnH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001740 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006296 fdnH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005325 fdnH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005770 fdnH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005106 fdnH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001895 fdnH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095172 fdnH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007789 fdnH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005748 fdnH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007104 fdnH CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263640 fdnH CDS
Person Approved Go view Shigella boydii 227 ADV-0001745 fdnH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007147 fdnH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004123 fdnH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001849 fdnH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072980 fdnH CDS
Person Approved Go view Shigella flexneri 301 ABT-0088051 fdnH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001862 fdnH CDS
Person Approved Go view Shigella sonnei 046 ADD-0001794 fdnH CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013480 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003866 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20331mutantTn5 InsertionRequest the StrainABE-0004919fdnHfdnH::Tn5KAN-2 at position 360 in Plus orientation ,- pKD460Blattner Laboratory
FB20332mutantTn5 InsertionRequest the StrainABE-0004919fdnHfdnH::Tn5KAN-2 at position 360 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1545461 to 1556345
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004906yddKpseudogenecomplement15454281545753Upstream
ABE-0004910yddLpseudogenecomplement15457511546028Upstream
ABE-0004912yddGCDScomplement15462881547169Upstream
ABE-0004917fdnGCDSforward15474011550448Upstream
ABE-0004919fdnHCDSforward15504611551345Matches
ABE-0004921fdnICDSforward15513381551991Overlaps Downstream
ABE-0285453repeat_regionforward15520711552167Downstream
ABE-0285454repeat_regionforward15522491552345Downstream
ABE-0004925yddMCDScomplement15523981552682Downstream
ABE-0004928adhPCDScomplement15528281553838Downstream
ABE-0004931maeACDScomplement15539721555669Downstream
ABE-0004935sraCDScomplement15558261555963Downstream
ABE-0004938bdmCDScomplement15560651556280Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.