Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004921 (fdnI) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004921 showshow history
Names
fdnI JW1472 ECK1470 b1476
Product
formate dehydrogenase N subunit gamma
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1551338 1551991 654 218
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006471 (IPR006471 Formate dehydrogenase, gamma subunit) Apr 2008
Automated Process Approved IPR011577 (IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase) Jul 2018
Automated Process Approved IPR016174 (IPR016174 Di-haem cytochrome, transmembrane) Jul 2018
Automated Process Approved PF01292 (PF01292 Prokaryotic cytochrome b561) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0022904 respiratory electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016174
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0045333 cellular respiration GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006471
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0017004 cytochrome complex assembly Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016174
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006471
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0009326 formate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006471
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011577
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008863 formate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006471
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fdnI Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1470 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1472 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1476 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product formate dehydrogenase N subunit gamma Published Annotation - EcoCyc Accession Number: EG11229
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name formate dehydrogenase-N, cytochrome B556(Fdn) gamma subunit, nitrate-inducible Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name formate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family PF01292 Prokaryotic cytochrome b561 Protein Sequence Similarity - PFAM Model Name: PF01292
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR016174 Di-haem cytochrome, transmembrane Protein Sequence Similarity - InterPro Domain: IPR016174
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006471 Formate dehydrogenase, gamma subunit Protein Sequence Similarity - InterPro Domain: IPR006471
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase Protein Sequence Similarity - InterPro Domain: IPR011577
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 1.17.5.3 Published Annotation - EcoCyc Accession Number: EG11229
Reference: Escherichia coli K-12 MG1655 		Dec 2019
Person Uncurated MultiFun 1.4.1 (metabolism; energy production/transport; electron donor) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.15.1 (metabolism; macromolecules (cellular constituent) biosynthesis; large molecule carriers; cytochromes) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004921 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11229 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AEK7 Published Annotation - Swiss-Prot Accession Number: P0AEK7 Jan 2006
Automated Process Approved db xref GI:1787750 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AEK7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946038 Published Annotation - Entrez Gene Database ID: 946038
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note formate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0009061 - anaerobic respiration; GO_process: GO:0017004 - cytochrome complex assembly Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAD13440.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0022904 respiratory electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016174
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0045333 cellular respiration GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006471
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0017004 cytochrome complex assembly Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006471
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0009326 formate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006471
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016174
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011577
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO molecular function GO:0009053 (DEPRECATED) electron donor activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008863 formate dehydrogenase (NAD+) activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006471
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002619 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002681 fdnI CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002687 fdnI CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0008488 fdnI CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002629 fdnI CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001148 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003127 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002261 fdnI CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002926 fdnI_1 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007565 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0019032 fdnI CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001514 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002802 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003982 fdnI CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005484 fdnI CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001489 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010074 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001449 fdnI CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0005112 fdnI CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007933 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005340 fdnI CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005083 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078024 fdnI CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001648 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001909 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005260 fdnI CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007970 fdnI CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001723 fdnI CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006097 fdnI CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003345 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005466 fdnI CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009831 fdnI CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008011 fdnI CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007054 fdnI CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006928 fdnI CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006929 fdnI CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011403 fdnI CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008069 fdnI CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008432 fdnI CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007020 fdnI CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007125 fdnI CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008780 fdnI CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026007 fdnI CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007972 fdnI CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006236 fdnI CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001908 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001385 fdnI CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001517 fdnI CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001771 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001784 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001725 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001712 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175846 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001594 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001697 fdnI CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132050 fdnI CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002040 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001699 fdnI CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0001417 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001870 fdnI CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0000027 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005934 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0000241 FdnI CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0061661 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000810 fdnI CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000380 fdnI CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004142 fdnI CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006005 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005771 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001455 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001822 fdnI CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006045 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004846 fdnI CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004730 fdnI CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004908 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006107 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005047 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005096 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004557 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005179 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006048 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004737 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001309 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001300 fdnI CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001741 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006295 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005326 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005769 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005105 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001894 fdnI CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095170 fdnI CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007790 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005747 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007103 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0263641 fdnI CDS
Person Approved Go view Shigella boydii 227 ADV-0001744 fdnI CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007148 fdnI CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004124 fdnI CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001850 fdnI CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072979 fdnI CDS
Person Approved Go view Shigella flexneri 301 ABT-0088050 fdnI CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001861 fdnI CDS
Person Approved Go view Shigella sonnei 046 ADD-0001793 fdnI CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013484 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003865 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB23522mutantTn5 InsertionRequest the StrainABE-0004921fdnIfdnI::Tn5KAN-2 at position 504 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1546338 to 1556991
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004912yddGCDScomplement15462881547169Upstream
ABE-0004917fdnGCDSforward15474011550448Upstream
ABE-0004919fdnHCDSforward15504611551345Overlaps Upstream
ABE-0004921fdnICDSforward15513381551991Matches
ABE-0285453repeat_regionforward15520711552167Downstream
ABE-0285454repeat_regionforward15522491552345Downstream
ABE-0004925yddMCDScomplement15523981552682Downstream
ABE-0004928adhPCDScomplement15528281553838Downstream
ABE-0004931maeACDScomplement15539721555669Downstream
ABE-0004935sraCDScomplement15558261555963Downstream
ABE-0004938bdmCDScomplement15560651556280Downstream
ABE-0004944osmCCDSforward15566251557056Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.