Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0004928 (adhP) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0004928 showshow history
Names
adhP yddN JW1474 ECK1472 b1478
Product
ethanol/alcohol dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1552828 1553838 1011 337
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013154 (IPR013154 Alcohol dehydrogenase, N-terminal) Apr 2008
Automated Process Approved IPR013149 (IPR013149 Alcohol dehydrogenase, C-terminal) Apr 2008
Automated Process Approved IPR002328 (IPR002328 Alcohol dehydrogenase, zinc-type, conserved site) Apr 2008
Automated Process Approved IPR002085 (IPR002085 (DEPRECATED) Alcohol dehydrogenase superfamily, zinc-type) Apr 2008
Automated Process Approved IPR011032 (IPR011032 GroES-like superfamily) Apr 2008
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR020843 (IPR020843 Polyketide synthase, enoylreductase domain) Jul 2018
Automated Process Approved PF00107 (PF00107 Zinc-binding dehydrogenase) Jul 2018
Automated Process Approved PF08240 (PF08240 Alcohol dehydrogenase GroES-like domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013149, IPR013154
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name adhP Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1472 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1474 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym yddN Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved locus tag b1478 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ethanol/alcohol dehydrogenase Published Annotation - EcoCyc Accession Number: G6775
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name alcohol dehydrogenase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name ethanol-active dehydrogenase/acetaldehyde-active reductase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name alcohol dehydrogenase, 1-propanol preferring Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name alcohol dehydrogenase, propanol-preferring Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Automated Process Approved protein family IPR011032 GroES-like superfamily Protein Sequence Similarity - InterPro Domain: IPR011032
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002085 (DEPRECATED) Alcohol dehydrogenase superfamily, zinc-type Protein Sequence Similarity - InterPro Domain: IPR002085
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Protein Sequence Similarity - InterPro Domain: IPR002328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF08240 Alcohol dehydrogenase GroES-like domain Protein Sequence Similarity - PFAM Model Name: PF08240
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013154 Alcohol dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00107 Zinc-binding dehydrogenase Protein Sequence Similarity - PFAM Model Name: PF00107
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013149 Alcohol dehydrogenase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013149
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR020843 Polyketide synthase, enoylreductase domain Protein Sequence Similarity - InterPro Domain: IPR020843
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.1.1.1 Published Annotation - Swiss-Prot Accession Number: P39451 Feb 2006
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P39451 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P39451 Published Annotation - Swiss-Prot Accession Number: P39451 Jan 2005
Automated Process Approved db xref GeneID:946036 Published Annotation - Entrez Gene Database ID: 946036
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:87081918 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0004928 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12622 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Anaerobic respiration Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note alcohol dehydrogenase; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74551.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR013149, IPR013154
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002328
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003590 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002683 adhP CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002678 adhP CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001965 adhP CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002587 adhP CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003448 adhP CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000473 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002799 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0299428 adhP CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001188 adhP CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002520 adhP CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005486 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001492 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010076 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001452 adhP CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002869 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007931 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005342 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005081 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078028 adhP CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001650 adhP CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001911 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005258 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007972 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001725 adhP CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006099 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003347 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005468 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009833 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008013 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007052 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006930 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006927 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011405 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008071 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008430 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007018 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007123 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008778 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026005 adhP CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0007970 adhP CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006239 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001905 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001387 adhP CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001519 adhP CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001769 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001786 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001723 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001715 adhP CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175849 adhP pseudogene
Automated Process Approved Go view Escherichia coli SE11 AFS-0001596 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001695 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132052 adhP CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0002038 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001703 adhP CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001858 adhP CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004616 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001556 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003457 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001622 CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005385 adhP CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003867 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000473 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0008063 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005772 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001456 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001821 adhP CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006046 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004848 adhP CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004732 adhP CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004909 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006106 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0005046 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005095 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004556 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005178 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006047 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004738 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001310 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001301 adhP CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001742 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006294 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005327 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005768 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005104 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108112 adhP CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083196 adhP CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001893 adhP CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0095168 adhP CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007791 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005746 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007102 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003404 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004126 CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0001852 adhP CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072976 adhP CDS
Person Approved Go view Shigella flexneri 301 ABT-0088048 adhP CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22322mutantTn5 InsertionRequest the StrainABE-0004928adhPadhP::Tn5KAN-I-SceI at position 82 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1547828 to 1558838
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0004917fdnGCDSforward15474011550448Downstream
ABE-0004919fdnHCDSforward15504611551345Downstream
ABE-0004921fdnICDSforward15513381551991Downstream
ABE-0285453repeat_regionforward15520711552167Downstream
ABE-0285454repeat_regionforward15522491552345Downstream
ABE-0004925yddMCDScomplement15523981552682Downstream
ABE-0004928adhPCDScomplement15528281553838Matches
ABE-0004931maeACDScomplement15539721555669Upstream
ABE-0004935sraCDScomplement15558261555963Upstream
ABE-0004938bdmCDScomplement15560651556280Upstream
ABE-0004944osmCCDSforward15566251557056Upstream
ABE-0285455repeat_regionforward15570631557081Upstream
ABE-0004947ddpFCDScomplement15571121558038Upstream
ABE-0004949ddpDCDScomplement15580311559017Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.