Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005056 (lsrA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005056 showshow history
Names
lsrA JW1506 ECK1506 ydeX ego b1513
Product
ATP-binding component of an ABC superfamily autoinducer-2 transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1601490 1603025 1536 512
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR030281 (IPR030281 Autoinducer 2 import ATP-binding protein LsrA) Jul 2018
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0008643 carbohydrate transport Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Uncurated GO biological process GO:1905887 autoinducer AI-2 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030281
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030281
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0031234 extrinsic component of cytoplasmic side of plasma membrane Published Annotation - PubMed ID: 15601708 Jan 2006
Person Approved GO cellular component GO:0043192 (DEPRECATED) ATP-binding cassette (ABC) transporter complex (sensu Bacteria and Archaea) Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030281
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0005524 ATP binding Published Annotation - PubMed ID: 15601708 Jan 2006
Person Approved GO molecular function GO:0015608 carbohydrate-importing ABC transporter activity Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lsrA Experimental - PubMed ID: 15601708 Jan 2006
Person Approved synonym ego Published Annotation - Swiss-Prot Accession Number: P77257 Aug 2002
Person Approved synonym ydeX Published Annotation - EcoCyc Accession Number: b1513 Jan 2006
Person Approved synonym JW1506 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1506 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1513 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily autoinducer-2 transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name autoinducer-2 (AI-2)-transporting ATPase Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Approved alternate product name autoinducer 2 import ATP-binding protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR030281 Autoinducer 2 import ATP-binding protein LsrA Protein Sequence Similarity - InterPro Domain: IPR030281
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.173 (transport; substrate; sugar) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787792 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13806 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005056 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945680 Published Annotation - Entrez Gene Database ID: 945680
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77257 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77257 Published Annotation - Swiss-Prot Accession Number: P77257 Jan 2005
Automated Process Approved function hydrolyzes ATP to provide energy for the uptake of autoinducer-2 (AI-2) (organism: Escherichia coli MG1655) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function hydrolyzes ATP to provide energy for the uptake of autoinducer-2 (AI-2) Published Annotation - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Jan 2006
Person Approved mutant phenotype lsrACDBFG null: no coordinate information; removal of autoinducer-2 from the culture medium is much slower in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved mutant phenotype lsrACDBFG null: no coordinate information; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved mutant phenotype lsrACDBFG null: no coordinate information; expression of an lsrR promoter-driven lacZ reporter is up-regulated in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 16321939
Reference: Escherichia coli K-12 W3110 		Feb 2006
Automated Process Approved note autoinducer-2 (AI-2)-transporting ATPase; GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74586.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved regulation expression regulated by luxS; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a luxS null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by glpD; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a glpD null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by luxS; expression of lsrA is down-regulated in a luxS null mutant grown in the absence of glucose, as determined by RT-PCR and microarray data Experimental - PubMed ID: 16321939
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by luxS; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a luxS null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by lsrK; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in an lsrK null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by lsrR; expression of an lsrACDBFG promoter-driven lacZ reporter is highly up-regulated in an lsrR null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by rpoS; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated in an rpoS null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by cyaA; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a cyaA null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by lsrR; expression of an lsrACDBFG promoter-driven lacZ reporter is highly up-regulated in an lsrR null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by lsrK; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in an lsrK null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by cAMP-CRP; expression of an lsrACDBFG promoter-driven lacZ reporter containing a four base mutation in the CRP binding site (ASAP:ABE-0285022) is down-regulated compared to the wild-type promoter; this same mutation affects cAMP-CRP binding in a gel-shift assay Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by glucose; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in culture medium containing glucose Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by autoinducer-2; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated by the addition of AI-2 to the culture medium in a luxS null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by crp; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a crp null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by cAMP-CRP; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a cyaA null mutant, but not in a cyaA-crp* (gain of function) double mutant. This effect in the double mutant is abrogated by the addition of glycerol 3-phosphate, but only partially by the addition of glycerol Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by glycerol and glycerol 3-phosphate; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in medium with glycerol or glycerol 3-phosphate Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 9.82
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0008643 carbohydrate transport Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Uncurated GO biological process GO:1905887 autoinducer AI-2 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030281
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0031234 extrinsic component of cytoplasmic side of plasma membrane Published Annotation - PubMed ID: 15601708 Jan 2006
Person Approved GO cellular component GO:0043192 (DEPRECATED) ATP-binding cassette (ABC) transporter complex (sensu Bacteria and Archaea) Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Uncurated GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030281
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO molecular function GO:0005524 ATP binding Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0042626 ATPase-coupled transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030281
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO molecular function GO:0015608 carbohydrate-importing ABC transporter activity Published Annotation - PubMed ID: 15601708 Jan 2006
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005390 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002843 lsrA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003020 lsrA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0006286 lsrA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003225 lsrA CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003885 lsrA CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010112 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007888 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005378 lsrA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005037 LsrA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001685 lsrA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001949 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005206 lsrA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008011 lsrA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003388 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005504 lsrA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009869 lsrA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008050 lsrA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007015 lsrA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006966 lsrA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006891 lsrA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011443 lsrA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008109 lsrA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008394 lsrA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006983 lsrA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007086 lsrA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008742 lsrA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025965 lsrA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006271 lsrA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001419 lsrA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001553 ego CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001809 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001766 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001632 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001658 lsrA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132090 lsrA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000699 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001129 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003554 ego CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010447 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144036 lsrA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008484 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0005523 lsrA pseudogene
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008715 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012757 ego CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010189 ego CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007473 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008761 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007812 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007675 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007371 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007873 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008752 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008657 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003955 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003914 lsrA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005069 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008897 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006681 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008354 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006946 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113013 lsrA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085268 lsrA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004905 ego CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102554 lsrA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005083 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007819 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005958 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004203 lsrA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072800 lsrA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087898 lsrA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001670 CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0005294 lsrA pseudogene
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000009 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001601 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003250 lsrA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002199 lsrA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002840 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243378 lsrA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004963 lsrA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004623 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005828 lsrA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002901 lsrA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116709 lsrA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005304 lsrA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007565 lsrA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003928 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005708 lsrA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007329 lsrA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033553 lsrA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004714 lsrA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000360 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003854 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006839 lsrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007539 lsrA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000591 lsrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000680 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004331 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22187mutantTn5 InsertionRequest the StrainABE-0005056lsrAb1513::Tn5KAN-I-SceI at position 1003 in Minus orientation ,+ pKD460Blattner Laboratory
FB23118mutantTn5 InsertionRequest the StrainABE-0005056lsrAb1513::Tn5KAN-I-SceI at position 1003 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1596490 to 1608025
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285161yneOpseudogenecomplement15926651598086Upstream
ABE-0005037ydeKCDSpcomplement15941091598086Upstream
ABE-0005041lsrKCDScomplement15986171600209Upstream
ABE-0005045lsrRCDScomplement16002881601241Upstream
ABE-0285726matS14protein_bindforward16004721600484Upstream
ABE-0285023protein_bindcomplement16013101601325Upstream
ABE-0285022protein_bindforward16013811601398Upstream
ABE-0005056lsrACDSforward16014901603025Matches
ABE-0005059lsrCCDSforward16030191604047Overlaps Downstream
ABE-0005061lsrDCDSforward16040471605039Downstream
ABE-0005063lsrBCDSforward16050511606073Downstream
ABE-0005065lsrFCDSforward16061001606975Downstream
ABE-0005067lsrGCDSforward16069991607289Downstream
ABE-0005070tamCDSforward16073461608104Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.