Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005059 (lsrC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005059 showshow history
Names
lsrC JW1507 ECK1507 ydeY b1514
Product
membrane component of an ABC superfamily AI2 transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1603019 1604047 1029 343
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001851 (IPR001851 ABC transporter, permease) Apr 2008
Automated Process Approved PF02653 (PF02653 Branched-chain amino acid transport system / permease component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0008643 carbohydrate transport Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005887 integral component of plasma membrane Published Annotation - PubMed ID: 15601708 Jan 2006
Person Approved GO cellular component GO:0043192 (DEPRECATED) ATP-binding cassette (ABC) transporter complex (sensu Bacteria and Archaea) Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO molecular function GO:0015144 carbohydrate transmembrane transporter activity Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lsrC Experimental - PubMed ID: 15601708 Jan 2006
Person Approved synonym ydeY Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW1507 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1507 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1514 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane component of an ABC superfamily AI2 transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Automated Process Approved alternate product name autoinducer 2 import system permease protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name autoinducer-2 (AI-2)-transporting membrane channel protein Published Annotation - PubMed ID: 15601708 Jan 2006
Protein Family
Automated Process Approved protein family IPR001851 ABC transporter, permease Protein Sequence Similarity - InterPro Domain: IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02653 Branched-chain amino acid transport system / permease component Protein Sequence Similarity - PFAM Model Name: PF02653
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.173 (transport; substrate; sugar) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77672 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13807 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787793 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005059 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946105 Published Annotation - Entrez Gene Database ID: 946105
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P77672 Published Annotation - Swiss-Prot Accession Number: P77672 Jan 2005
Automated Process Approved function forms heterodimeric membrane channel with LsrD for the uptake of autoinducer-2 (AI-2) (organism: Escherichia coli MG1655) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function forms heterodimeric membrane channel with LsrD for the uptake of autoinducer-2 (AI-2) Published Annotation - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Jan 2006
Person Uncurated mutant phenotype lsrACDBFG null: no coordinate information; expression of an lsrR promoter-driven lacZ reporter is up-regulated in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 16321939
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated mutant phenotype lsrACDBFG null: no coordinate information; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated mutant phenotype lsrACDBFG null: no coordinate information; removal of autoinducer-2 from the culture medium is much slower in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated mutant phenotype lsrCDB null: no coordinate information; elimination of autoinducer-2 from the culture medium is slower in a strain deleted for lsrCDB Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Automated Process Approved note autoinducer-2 (AI-2)-transporting membrane channel protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74587.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation expression regulated by luxS; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a luxS null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by luxS; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a luxS null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by luxS; expression of lsrC is down-regulated in a luxS null mutant grown in the absence of glucose, as determined by RT-PCR and microarray data Experimental - PubMed ID: 16321939
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by cyaA; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a cyaA null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by lsrK; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in an lsrK null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by rpoS; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated in an rpoS null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by lsrR; expression of an lsrACDBFG promoter-driven lacZ reporter is highly up-regulated in an lsrR null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by lsrK; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in an lsrK null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by crp; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a crp null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by lsrR; expression of an lsrACDBFG promoter-driven lacZ reporter is highly up-regulated in an lsrR null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by glpD; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a glpD null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by glucose; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in culture medium containing glucose Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by glycerol and glycerol 3-phosphate; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in medium with glycerol or glycerol 3-phosphate Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by cAMP-CRP; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a cyaA null mutant, but not in a cyaA-crp* (gain of function) double mutant. This effect in the double mutant is abrogated by the addition of glycerol 3-phosphate, but only partially by the addition of glycerol Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by autoinducer-2; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated by the addition of AI-2 to the culture medium in a luxS null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by cAMP-CRP; expression of an lsrACDBFG promoter-driven lacZ reporter containing a four base mutation in the CRP binding site (ASAP:ABE-0285022) is down-regulated compared to the wild-type promoter; this same mutation affects cAMP-CRP binding in a gel-shift assay Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0008643 carbohydrate transport Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005887 integral component of plasma membrane Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0043192 (DEPRECATED) ATP-binding cassette (ABC) transporter complex (sensu Bacteria and Archaea) Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO molecular function GO:0015144 carbohydrate transmembrane transporter activity Published Annotation - PubMed ID: 15601708 Jan 2006
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005391 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002816 lsrC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003006 lsrC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0006287 lsrC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003247 lsrC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003797 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003886 lsrC CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004530 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005544 lsrC CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010113 ydeY CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007886 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005379 lsrC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005036 LsrC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001686 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001950 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005205 lsrC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008012 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003389 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005505 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009870 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008051 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007014 lsrC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006967 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006890 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011444 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008110 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008393 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006982 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007085 lsrC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008741 lsrC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025964 lsrC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006272 lsrC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001420 lsrC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001554 lsrC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001810 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001767 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001633 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001657 lsrC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132091 lsrC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000698 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001130 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003553 ydeY CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001816 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010446 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144038 lsrC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008485 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004654 lsrC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008716 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012762 ydeY CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010185 ydeY CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007472 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008762 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007811 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007676 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007372 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007874 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008753 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008658 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003956 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003915 lsrC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005070 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008898 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006680 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008355 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006947 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113012 lsrC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085267 lsrC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004906 ydeY CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102557 lsrC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005082 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007818 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005959 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004202 lsrC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072801 lsrC CDS
Person Approved Go view Shigella flexneri 301 ABT-0087899 lsrC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001671 ydeY CDS
Person Uncurated Go view Shigella sonnei 046 ADD-0005296 lsrC pseudogene
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000008 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001597 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003249 lsrC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002200 lsrC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002839 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243379 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004964 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004624 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005827 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002902 lsrC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116698 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005305 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007564 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003927 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005707 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007330 lsrC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033554 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004715 lsrC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000359 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003855 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006840 lsrC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007540 lsrC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000590 lsrC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000679 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004332 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22188mutantTn5 InsertionRequest the StrainABE-0005059lsrCydeY::Tn5KAN-I-SceI at position 673 in Plus orientation ,+ pKD460Blattner Laboratory
FB23119mutantTn5 InsertionRequest the StrainABE-0005059lsrCydeY::Tn5KAN-I-SceI at position 673 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1598019 to 1609047
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285161yneOpseudogenecomplement15926651598086Upstream
ABE-0005037ydeKCDSpcomplement15941091598086Upstream
ABE-0005041lsrKCDScomplement15986171600209Upstream
ABE-0005045lsrRCDScomplement16002881601241Upstream
ABE-0285726matS14protein_bindforward16004721600484Upstream
ABE-0285023protein_bindcomplement16013101601325Upstream
ABE-0285022protein_bindforward16013811601398Upstream
ABE-0005056lsrACDSforward16014901603025Overlaps Upstream
ABE-0005059lsrCCDSforward16030191604047Matches
ABE-0005061lsrDCDSforward16040471605039Overlaps Downstream
ABE-0005063lsrBCDSforward16050511606073Downstream
ABE-0005065lsrFCDSforward16061001606975Downstream
ABE-0005067lsrGCDSforward16069991607289Downstream
ABE-0005070tamCDSforward16073461608104Downstream
ABE-0005072yneECDScomplement16081081609022Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.