Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005061 (lsrD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005061 showshow history
Names
lsrD JW1508 ECK1508 ydeZ b1515
Product
membrane component of an ABC superfamily AI2 transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1604047 1605039 993 331
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001851 (IPR001851 ABC transporter, permease) Apr 2008
Automated Process Approved PF02653 (PF02653 Branched-chain amino acid transport system / permease component) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0008643 carbohydrate transport Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005887 integral component of plasma membrane Published Annotation - PubMed ID: 15601708 Jan 2006
Person Approved GO cellular component GO:0043192 (DEPRECATED) ATP-binding cassette (ABC) transporter complex (sensu Bacteria and Archaea) Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO molecular function GO:0015144 carbohydrate transmembrane transporter activity Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lsrD Experimental - PubMed ID: 15601708 Jan 2006
Person Approved synonym ydeZ Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW1508 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1508 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1515 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product membrane component of an ABC superfamily AI2 transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Automated Process Approved alternate product name autoinducer 2 import system permease protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name autoinducer-2 (AI-2)-transporting membrane channel protein Published Annotation - PubMed ID: 15601708 Jan 2006
Protein Family
Automated Process Approved protein family IPR001851 ABC transporter, permease Protein Sequence Similarity - InterPro Domain: IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02653 Branched-chain amino acid transport system / permease component Protein Sequence Similarity - PFAM Model Name: PF02653
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.173 (transport; substrate; sugar) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFS1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13808 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787794 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005061 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946264 Published Annotation - Entrez Gene Database ID: 946264
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AFS1 Published Annotation - Swiss-Prot Accession Number: P0AFS1 Jan 2006
Automated Process Approved function forms heterodimeric membrane channel with LsrC for the uptake of autoinducer-2 (AI-2) (organism: Escherichia coli MG1655) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function forms heterodimeric membrane channel with LsrC for the uptake of autoinducer-2 (AI-2) Published Annotation - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Jan 2006
Person Uncurated mutant phenotype lsrACDBFG null: no coordinate information; expression of an lsrR promoter-driven lacZ reporter is up-regulated in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 16321939
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated mutant phenotype lsrACDBFG null: no coordinate information; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated mutant phenotype lsrACDBFG null: no coordinate information; removal of autoinducer-2 from the culture medium is much slower in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated mutant phenotype lsrCDB null: no coordinate information; elimination of autoinducer-2 from the culture medium is slower in a strain deleted for lsrCDB Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Automated Process Approved note autoinducer-2 (AI-2)-transporting membrane channel protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74588.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation expression regulated by luxS; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a luxS null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by luxS; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a luxS null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by luxS; expression of lsrD is down-regulated in a luxS null mutant grown in the absence of glucose, as determined by RT-PCR and microarray data Experimental - PubMed ID: 16321939
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by cyaA; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a cyaA null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by lsrK; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in an lsrK null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by rpoS; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated in an rpoS null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by lsrR; expression of an lsrACDBFG promoter-driven lacZ reporter is highly up-regulated in an lsrR null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by lsrK; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in an lsrK null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by crp; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a crp null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by lsrR; expression of an lsrACDBFG promoter-driven lacZ reporter is highly up-regulated in an lsrR null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by glpD; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a glpD null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by glucose; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in culture medium containing glucose Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by glycerol and glycerol 3-phosphate; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in medium with glycerol or glycerol 3-phosphate Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by cAMP-CAP; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a cyaA null mutant, but not in a cyaA-crp* (gain of function) double mutant. This effect in the double mutant is abrogated by the addition of glycerol 3-phosphate, but only partially by the addition of glycerol Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by autoinducer-2; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated by the addition of AI-2 to the culture medium in a luxS null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by cAMP-CRP; expression of an lsrACDBFG promoter-driven lacZ reporter containing a four base mutation in the CRP binding site (ASAP:ABE-0285022) is down-regulated compared to the wild-type promoter; this same mutation affects cAMP-CRP binding in a gel-shift assay Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0008643 carbohydrate transport Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005887 integral component of plasma membrane Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0043192 (DEPRECATED) ATP-binding cassette (ABC) transporter complex (sensu Bacteria and Archaea) Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001851
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR001851
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO molecular function GO:0015144 carbohydrate transmembrane transporter activity Published Annotation - PubMed ID: 15601708 Jan 2006
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005392 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002829 lsrD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003039 lsrD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0006284 lsrD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003250 lsrD CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003796 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003887 lsrD_2 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004531 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005545 lsrD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007885 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005380 lsrD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005035 CDS
Person Uncurated Go view Escherichia coli BL21(DE3) AHL-0003228 pseudogene
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001687 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001951 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005204 lsrD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008013 lsrD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003390 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005506 lsrD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009871 lsrD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008052 lsrD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007013 lsrD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006968 lsrD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006889 lsrD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011445 lsrD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008111 lsrD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008392 lsrD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006981 lsrD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007084 lsrD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008740 lsrD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025963 lsrD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006273 lsrD CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001421 lsrD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001555 lsrD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001811 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001876 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001768 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001634 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001656 lsrD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132092 lsrD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000697 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001131 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003552 ydeZ CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001815 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010445 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144040 lsrD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008486 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004655 lsrD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008717 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012766 ydeZ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010182 ydeZ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007471 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008763 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007810 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007677 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007373 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007875 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008754 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008659 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003957 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003916 lsrD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005071 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008899 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006679 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008356 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006948 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113011 lsrD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085266 lsrD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004907 ydeZ CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102560 lsrD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005081 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007817 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005960 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072802 lsrD CDS
Person Approved Go view Shigella flexneri 301 ABT-0087900 lsrD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001672 ydeZ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000007 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001594 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003248 lsrD_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002201 lsrD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002838 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243389 lsrD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004965 lsrD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004625 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005826 lsrD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002903 lsrD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116688 lsrD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005306 lsrD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007563 lsrD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003926 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005706 lsrD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007331 lsrD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033555 lsrD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004716 lsrD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000358 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003856 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006841 lsrD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007541 lsrD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000589 lsrD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000678 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004333 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006807 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002671 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1599047 to 1610039
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005041lsrKCDScomplement15986171600209Upstream
ABE-0005045lsrRCDScomplement16002881601241Upstream
ABE-0285726matS14protein_bindforward16004721600484Upstream
ABE-0285023protein_bindcomplement16013101601325Upstream
ABE-0285022protein_bindforward16013811601398Upstream
ABE-0005056lsrACDSforward16014901603025Upstream
ABE-0005059lsrCCDSforward16030191604047Overlaps Upstream
ABE-0005061lsrDCDSforward16040471605039Matches
ABE-0005063lsrBCDSforward16050511606073Downstream
ABE-0005065lsrFCDSforward16061001606975Downstream
ABE-0005067lsrGCDSforward16069991607289Downstream
ABE-0005070tamCDSforward16073461608104Downstream
ABE-0005072yneECDScomplement16081081609022Downstream
ABE-0005076uxaBCDScomplement16092291610680Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.