Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005063 (lsrB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005063 showshow history
Names
lsrB JW1509 ECK1509 yneA b1516
Product
periplasmic-binding component of an ABC superfamily AI2 transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1605051 1606073 1023 341
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR025997 (IPR025997 Periplasmic binding protein) Jul 2018
Automated Process Approved IPR030159 (IPR030159 Autoinducer 2 ABC transporter, substrate-binding protein LsrB) Jul 2018
Automated Process Approved IPR028082 (IPR028082 Periplasmic binding protein-like I) Jul 2018
Automated Process Approved PF13407 (PF13407 Periplasmic binding protein domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0008643 carbohydrate transport Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030159
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0043192 (DEPRECATED) ATP-binding cassette (ABC) transporter complex (sensu Bacteria and Archaea) Published Annotation - PubMed ID: 15601708 Jan 2006
Person Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space Published Annotation - PubMed ID: 15601708 Jan 2006
Person Approved GO molecular function GO:0030246 carbohydrate binding Published Annotation - PubMed ID: 15601708 Jan 2006
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lsrB Experimental - PubMed ID: 15601708 Jan 2006
Person Approved synonym yneA Published Annotation - Swiss-Prot Accession Number: P76142 Aug 2002
Person Approved synonym JW1509 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1509 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1516 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product periplasmic-binding component of an ABC superfamily AI2 transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2008
Automated Process Approved alternate product name autoinducer 2-binding protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name periplasmic autoinducer-2 (AI-2) binding protein Published Annotation - PubMed ID: 15601708 Jan 2006
Protein Family
Automated Process Approved protein family PF13407 Periplasmic binding protein domain Protein Sequence Similarity - PFAM Model Name: PF13407
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR025997 Periplasmic binding protein Protein Sequence Similarity - InterPro Domain: IPR025997
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR028082 Periplasmic binding protein-like I Protein Sequence Similarity - InterPro Domain: IPR028082
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR030159 Autoinducer 2 ABC transporter, substrate-binding protein LsrB Protein Sequence Similarity - InterPro Domain: IPR030159
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 4.3.A.1.p (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, periplasmic binding component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.173 (transport; substrate; sugar) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13809 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P76142 Published Annotation - Swiss-Prot Accession Number: P76142 Jan 2006
Automated Process Approved db xref GeneID:945418 Published Annotation - Entrez Gene Database ID: 945418
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0005063 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787795 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76142 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved mutant phenotype lsrACDBFG null: no coordinate information; expression of an lsrR promoter-driven lacZ reporter is up-regulated in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 16321939
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved mutant phenotype lsrCDB null: no coordinate information; elimination of autoinducer-2 from the culture medium is slower in a strain deleted for lsrCDB Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved mutant phenotype lsrACDBFG null: no coordinate information; removal of autoinducer-2 from the culture medium is much slower in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved mutant phenotype lsrACDBFG null: no coordinate information; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Automated Process Approved note periplasmic autoinducer-2 (AI-2) binding protein; periplasmic-binding component of ABC superfamily; GO_component: GO:0042597 - periplasmic space Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74589.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved regulation expression regulated by lsrK; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in an lsrK null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by luxS; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a luxS null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by autoinducer-2; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated by the addition of AI-2 to the culture medium in a luxS null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by lsrR; expression of an lsrACDBFG promoter-driven lacZ reporter is highly up-regulated in an lsrR null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by rpoS; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated in an rpoS null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by luxS; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a luxS null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by lsrR; expression of an lsrACDBFG promoter-driven lacZ reporter is highly up-regulated in an lsrR null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by lsrK; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in an lsrK null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by cAMP-CRP; expression of an lsrACDBFG promoter-driven lacZ reporter containing a four base mutation in the CRP binding site (ASAP:ABE-0285022) is down-regulated compared to the wild-type promoter; this same mutation affects cAMP-CRP binding in a gel-shift assay Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by cAMP-CRP; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a cyaA null mutant, but not in a cyaA-crp* (gain of function) double mutant. This effect in the double mutant is abrogated by the addition of glycerol 3-phosphate, but only partially by the addition of glycerol Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by luxS; expression of lsrB is down-regulated in a luxS null mutant grown in the absence of glucose, as determined by microarray data Experimental - PubMed ID: 16321939
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by glycerol and glycerol 3-phosphate; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in medium with glycerol or glycerol 3-phosphate Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by crp; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a crp null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Approved regulation expression regulated by glpD; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a glpD null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by cyaA; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a cyaA null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Approved regulation expression regulated by glucose; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in culture medium containing glucose Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 9.76
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0008643 carbohydrate transport Published Annotation - PubMed ID: 15601708 Jan 2006
Person Approved GO cellular component GO:0043192 (DEPRECATED) ATP-binding cassette (ABC) transporter complex (sensu Bacteria and Archaea) Published Annotation - PubMed ID: 15601708 Jan 2006
Person Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space Published Annotation - PubMed ID: 15601708 Jan 2006
Automated Process Uncurated GO cellular component GO:0043190 ATP-binding cassette (ABC) transporter complex GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR030159
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO molecular function GO:0030246 carbohydrate binding Published Annotation - PubMed ID: 15601708 Jan 2006
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005144 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002732 lsrB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002956 lsrB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0006285 lsrB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003170 lsrB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003795 lsrB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003888 lsrB_2 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005546 lsrB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007883 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005381 lsrB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005034 CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001688 lsrB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001952 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008014 lsrB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006155 lsrB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003391 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005507 lsrB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009872 lsrB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008053 lsrB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007012 lsrB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006969 lsrB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006888 lsrB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011446 lsrB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008112 lsrB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008391 lsrB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006980 lsrB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007083 lsrB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008739 lsrB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025962 lsrB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006274 lsrB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001422 lsrB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001556 lsrB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001812 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001875 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001769 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001635 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001655 lsrB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132093 lsrB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000696 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001132 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003551 yneA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001814 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0010444 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144043 lsrB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008487 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004656 lsrB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008718 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012770 yneA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010180 yneA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007470 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008764 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007809 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007678 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007374 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007876 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008755 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008660 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003958 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003917 lsrB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005072 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008900 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006678 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008357 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006949 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113010 lsrB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085265 lsrB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004908 yneA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102563 lsrB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005080 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007816 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005961 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004200 lsrB CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0285055 lsrB pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0286235 lsrB pseudogene
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000006 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001590 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003247 lsrB_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002202 lsrB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002837 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243400 lsrB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004966 lsrB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004626 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005825 lsrB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002904 lsrB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116684 lsrB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005307 lsrB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007562 lsrB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003925 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005705 lsrB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007332 lsrB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033556 lsrB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004717 lsrB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000356 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003857 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006842 lsrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007542 lsrB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000588 lsrB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000676 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004334 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006810 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002670 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22189mutantTn5 InsertionRequest the StrainABE-0005063lsrBb1516::Tn5KAN-I-SceI at position 453 in Minus orientation ,+ pKD460Blattner Laboratory
FB23120mutantTn5 InsertionRequest the StrainABE-0005063lsrBb1516::Tn5KAN-I-SceI at position 453 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1600051 to 1611073
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005041lsrKCDScomplement15986171600209Upstream
ABE-0005045lsrRCDScomplement16002881601241Upstream
ABE-0285726matS14protein_bindforward16004721600484Upstream
ABE-0285023protein_bindcomplement16013101601325Upstream
ABE-0285022protein_bindforward16013811601398Upstream
ABE-0005056lsrACDSforward16014901603025Upstream
ABE-0005059lsrCCDSforward16030191604047Upstream
ABE-0005061lsrDCDSforward16040471605039Upstream
ABE-0005063lsrBCDSforward16050511606073Matches
ABE-0005065lsrFCDSforward16061001606975Downstream
ABE-0005067lsrGCDSforward16069991607289Downstream
ABE-0005070tamCDSforward16073461608104Downstream
ABE-0005072yneECDScomplement16081081609022Downstream
ABE-0005076uxaBCDScomplement16092291610680Downstream
ABE-0005081dgcFpseudogenecomplement16109071611892Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.