Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005065 (lsrF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005065 showshow history
Names
lsrF JW1510 ECK1510 yneB b1517
Product
putative autoinducer-2 (AI-2) aldolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1606100 1606975 876 292
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved IPR002915 (IPR002915 DeoC/FbaB/LacD aldolase) Apr 2008
Automated Process Approved PF01791 (PF01791 DeoC/LacD family aldolase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002915
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lsrF Experimental - PubMed ID: 15601708 Jan 2006
Person Approved synonym yneB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1510 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1510 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1517 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product putative autoinducer-2 (AI-2) aldolase Published Annotation - PubMed ID: 15601708 Jan 2006
Protein Family
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002915 DeoC/FbaB/LacD aldolase Protein Sequence Similarity - InterPro Domain: IPR002915
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01791 DeoC/LacD family aldolase Protein Sequence Similarity - PFAM Model Name: PF01791
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 4.-.-.- Published Annotation - Database Name: EC2GO: GO:0016829
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 4.2.1.- Published Annotation - Swiss-Prot Accession Number: P76143 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13810 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787796 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P76143 Published Annotation - Swiss-Prot Accession Number: P76143 Jan 2005
Automated Process Approved db xref GeneID:946071 Published Annotation - Entrez Gene Database ID: 946071
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76143 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005065 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function modification of phospho-autoinducer-2 (organism: Escherichia coli MG1655) Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function modification of phospho-autoinducer-2 Published Annotation - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Jan 2006
Person Uncurated mutant phenotype lsrACDBFG null: no coordinate information; expression of an lsrR promoter-driven lacZ reporter is up-regulated in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 16321939
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated mutant phenotype lsrACDBFG null: no coordinate information; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated mutant phenotype lsrACDBFG null: no coordinate information; removal of autoinducer-2 from the culture medium is much slower in a mutant deleted for the lsrACDBFG operon Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Automated Process Approved protein id AAC74590.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation expression regulated by lsrK; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in an lsrK null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by glucose; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in culture medium containing glucose Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by luxS; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a luxS null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by lsrR; expression of an lsrACDBFG promoter-driven lacZ reporter is highly up-regulated in an lsrR null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by lsrR; expression of an lsrACDBFG promoter-driven lacZ reporter is highly up-regulated in an lsrR null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by autoinducer-2; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated by the addition of AI-2 to the culture medium in a luxS null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by rpoS; expression of an lsrACDBFG promoter-driven lacZ reporter is up-regulated in an rpoS null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by luxS; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a luxS null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by lsrK; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in an lsrK null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by luxS; expression of lsrF is down-regulated in a luxS null mutant grown in the absence of glucose, as determined by microarray data Experimental - PubMed ID: 16321939
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by cAMP-CRP; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a cyaA null mutant, but not in a cyaA-crp* (gain of function) double mutant. This effect in the double mutant is abrogated by the addition of glycerol 3-phosphate, but only partially by the addition of glycerol Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by glycerol and glycerol 3-phosphate; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in medium with glycerol or glycerol 3-phosphate Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by cAMP-CRP; expression of an lsrACDBFG promoter-driven lacZ reporter containing a four base mutation in the CRP binding site (ASAP:ABE-0285022) is down-regulated compared to the wild-type promoter; this same mutation affects cAMP-CRP binding in a gel-shift assay Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by crp; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a crp null mutant Experimental - PubMed ID: 15743955
Reference: Escherichia coli K-12 W3110 		Feb 2006
Person Uncurated regulation expression regulated by cyaA; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a cyaA null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Person Uncurated regulation expression regulated by glpD; expression of an lsrACDBFG promoter-driven lacZ reporter is down-regulated in a glpD null mutant Experimental - PubMed ID: 15601708
Reference: Escherichia coli K-12 MG1655 		Feb 2006
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016829 lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002915
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004278 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002563 lsrF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002724 lsrF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001586 lsrF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002974 lsrF CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0003794 lsrF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0003656 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0003889 lsrF CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0004534 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005547 lsrF CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010116 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007882 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005382 lsrF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005033 lsrF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001689 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001953 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005201 lsrF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008015 lsrF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006156 lsrF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003392 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005508 lsrF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009873 lsrF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008054 lsrF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007011 lsrF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006970 lsrF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006887 lsrF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011447 lsrF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008113 lsrF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008390 lsrF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006979 lsrF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007082 lsrF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008738 lsrF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025961 lsrF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006275 lsrF CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001423 lsrF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001557 lsrF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001813 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001874 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001770 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001636 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001654 lsrF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132094 lsrF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000695 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001133 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0003550 yneB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0001813 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0144046 lsrF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0008488 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0004657 lsrF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0008719 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0012772 yneB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0010177 yneB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007469 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0008765 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0007808 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007679 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007375 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0007877 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0008756 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008661 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0003959 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0003918 lsrF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0005073 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0008901 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006677 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0008358 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006950 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0113009 lsrF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0085264 lsrF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0004909 yneB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0102566 lsrF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0005079 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0007815 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0005962 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004199 lsrF CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0001870 yneB CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0285059 lsrF pseudogene
Person Uncurated Go view Shigella flexneri 301 ABT-0286239 lsrF pseudogene
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001676 yneB CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0007759 lsrF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000005 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0001587 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003246 lsrF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002203 lsrF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002836 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243402 lsrF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0004967 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0004628 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005824 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002905 lsrF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0116682 lsrF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005308 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007561 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003924 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005704 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007333 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033557 lsrF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004718 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000355 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003859 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006843 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007543 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000587 lsrF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000675 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004336 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0006814 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0002669 CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0005065 lsrF lambda repressor assay Doodle - bnumber: b1517 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22190mutantTn5 InsertionRequest the StrainABE-0005065lsrFyneB::Tn5KAN-I-SceI at position 318 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1601100 to 1611975
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005045lsrRCDScomplement16002881601241Upstream
ABE-0285023protein_bindcomplement16013101601325Upstream
ABE-0285022protein_bindforward16013811601398Upstream
ABE-0005056lsrACDSforward16014901603025Upstream
ABE-0005059lsrCCDSforward16030191604047Upstream
ABE-0005061lsrDCDSforward16040471605039Upstream
ABE-0005063lsrBCDSforward16050511606073Upstream
ABE-0005065lsrFCDSforward16061001606975Matches
ABE-0005067lsrGCDSforward16069991607289Downstream
ABE-0005070tamCDSforward16073461608104Downstream
ABE-0005072yneECDScomplement16081081609022Downstream
ABE-0005076uxaBCDScomplement16092291610680Downstream
ABE-0005081dgcFpseudogenecomplement16109071611892Downstream
ABE-0005084yneGCDScomplement16119661612325Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.