Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005103 (ydeA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005103 showshow history
Names
ydeA JW1521 ECK1521 sotB b1528
Product
L-arabinose exporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1617028 1618218 1191 397
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF07690 (PF07690 Major Facilitator Superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0015524 (OBSOLETE) L-arabinose/beta-D-thiogalactopyranoside:hydrogen antiporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ydeA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1521 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1521 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym sotB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Aug 2002
Person Approved locus tag b1528 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product L-arabinose exporter Published Annotation - EcoCyc Accession Number: EG11636
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein (MFS family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name predicted arabinose transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name arabinose efflux transporter, arabinose-inducible Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF07690 Major Facilitator Superfamily Protein Sequence Similarity - PFAM Model Name: PF07690
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 3.1.4 (regulation; type of regulation; regulation level unknown) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 3.3.1 (regulation; genetic unit regulated; operon) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.102 (transport; substrate; L-arabinose/ isopropyl-beta-D-thiogalactopyranoside) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.1 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Major Facilitator Superfamily (MFS)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947218 Published Annotation - Entrez Gene Database ID: 947218
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P31122 Published Annotation - Swiss-Prot Accession Number: P31122 Jan 2005
Automated Process Approved db xref GI:1787808 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P31122 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005103 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11636 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function transport; Transport of small molecules: sugars Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein (MFS family); GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_function: GO:0015524 - L-arabinose/beta-D-thiogalactopyranoside:hydrogen antiporter activity; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74601.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011701
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO molecular function GO:0015524 (OBSOLETE) L-arabinose/beta-D-thiogalactopyranoside:hydrogen antiporter activity Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001841 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002318 ydeA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002185 ydeA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002427 ydeA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002067 ydeA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002078 sotB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0001885 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002230 sotB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002873 sotB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007275 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020022 sotB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001714 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002700 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301595 sotB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001963 ydeA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001757 sotB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0003952 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005559 sotB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001523 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010128 sotB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001485 sotB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002830 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007871 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005394 sotB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005019 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078065 sotB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001701 sotB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0001966 sotB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005190 sotB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008029 sotB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001762 ydeA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006168 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003404 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005521 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009885 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008066 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006999 sotB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0006982 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0006875 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0011459 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008125 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0008378 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006967 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007070 sotB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008727 sotB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0025947 ydeA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009412 sotB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006286 sotB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001433 ydeA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001568 ydeA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001828 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001859 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0001783 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001754 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175900 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001647 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001641 sotB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132105 ydeA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0000681 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001754 sotB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0004213 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002897 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001632 sotB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004531 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007127 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001316 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003728 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001338 sotB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002757 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002043 sotB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002177 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009735 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001847 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290121 ydeA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005151 ydeA CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064647 sotB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002548 sotB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002268 sotB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000688 sotB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0004597 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001026 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005822 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001516 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001790 ydeA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006083 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0004969 ydeA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004830 ydeA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0004954 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006057 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004994 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005043 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004504 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005125 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0006002 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004784 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001342 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001333 ydeA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001793 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006245 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005379 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005714 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0005045 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108183 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0083157 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001842 ydeA CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0095047 ydeA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007840 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005701 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007054 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002587 CDS
Person Approved Go view Shigella boydii 227 ADV-0001822 ydeA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007087 sotB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004184 sotB CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0001842 ydeA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072781 ydeA CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0087883 ydeA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001692 ydeA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001735 ydeA CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013705 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003802 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20344mutantTn5 InsertionRequest the StrainABE-0005103ydeAydeA::Tn5KAN-I-SceI at position 1058 in Minus orientation ,- pKD465Blattner Laboratory
FB20345mutantTn5 InsertionRequest the StrainABE-0005103ydeAydeA::Tn5KAN-I-SceI at position 1058 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1612028 to 1623218
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005084yneGCDScomplement16119661612325Upstream
ABE-0005086glsBCDScomplement16123251613251Upstream
ABE-0005092sadCDScomplement16133151614703Upstream
ABE-0005096yneJCDSforward16148041615685Upstream
ABE-0005100yneKCDSforward16157631616878Upstream
ABE-0005103ydeACDSforward16170281618218Matches
ABE-0005106marCCDScomplement16182431618908Downstream
ABE-0005110marRCDSforward16191201619554Downstream
ABE-0005112marACDSforward16195741619957Downstream
ABE-0285727matS15protein_bindforward16199661619978Downstream
ABE-0005114marBCDSforward16199891620207Downstream
ABE-0005116eamACDScomplement16202381621137Downstream
ABE-0005121ydeECDSforward16213321622519Downstream
ABE-0285183mgtSCDSforward16226461622741Downstream
ABE-0285749mgtTCDSforward16227411622845Downstream
ABE-0285266mgrRncRNAcomplement16228171622914Downstream
ABE-0005123dgcZCDScomplement16229601623850Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.