Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005311 (ynfH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005311 showshow history
Names
ynfH JW5261 ECK1585 b1590
Product
putative menaquinol dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1663609 1664463 855 285
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007059 (IPR007059 DMSO reductase anchor subunit (DmsC)) Apr 2008
Automated Process Approved PF04976 (PF04976 DMSO reductase anchor subunit (DmsC)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0019645 anaerobic electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ynfH Published Annotation - Swiss-Prot Accession Number: P76173 Aug 2002
Person Approved synonym ECK1585 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5261 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1590 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative menaquinol dehydrogenase Published Annotation - EcoCyc Accession Number: G6848
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name putative dimethyl sulfoxide reductase, anchor subunit Published Annotation - Swiss-Prot Accession Number: P76173 Jan 2006
Person Approved alternate product name oxidoreductase, membrane subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR007059 DMSO reductase anchor subunit (DmsC) Protein Sequence Similarity - InterPro Domain: IPR007059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF04976 DMSO reductase anchor subunit (DmsC) Protein Sequence Similarity - PFAM Model Name: PF04976
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13846 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005311 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945822 Published Annotation - Entrez Gene Database ID: 945822
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787873 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76173 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P76173 Published Annotation - Swiss-Prot Accession Number: P76173 Jan 2006
Person Approved function putative enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74662.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0019645 anaerobic electron transport chain GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007059
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004944 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003076 ynfH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003188 ynfH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004960 ynfH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002818 ynfH CDS
Paralog
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0003048 dmsC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001917 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002196 dmsC_3 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002843 dmsC_3 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002524 CDS
Automated Process Approved Go view Escherichia albertii TW07627 AFX-0004133 dmsC CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0005619 dmsC2 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0010155 dmsC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001513 ynfH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002798 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007770 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0005426 dmsC2 CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0006050 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078096 ynfH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001792 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002073 CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0005099 dmsC2 CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0008702 dmsC2 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001788 ynfH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006234 dmsC2 CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0001770 CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0009986 dmsC2 CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0009931 dmsC2 CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0008702 dmsC2 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007139 dmsC2 CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0008420 dmsC2 CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0010969 dmsC2 CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0009399 dmsC2 CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0011043 dmsC2 CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0009270 dmsC2 CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0008562 dmsC2 CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0009689 dmsC2 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026377 ynfH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006338 dmsC2 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0001990 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0001492 ynfH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001632 ynfH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001939 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001943 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002326 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001786 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175933 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001740 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001609 dmsC2 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132277 ynfH CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0004289 CDS
Person Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001784 ynfH CDS
Person Approved Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001582 ynfH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004439 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0007041 CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0005850 dmsC CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0001485 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001756 ynfH CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0006113 dmsC CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0005064 dmsC1 CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0004915 dmsC1 CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0004983 dmsC CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0006029 dmsC CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0004965 dmsC CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0005013 dmsC CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0004476 dmsC CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0005096 dmsC CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0005974 dmsC CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0004813 dmsC CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0001367 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001358 ynfH CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0001826 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0006217 dmsC CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0005407 dmsC CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0005685 dmsC CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0005017 dmsC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108241 ynfH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083131 ynfH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001809 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094976 ynfH CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0007869 dmsC CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0005673 dmsC CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0008530 dmsC CDS
Person Approved Go view Shigella boydii 227 ADV-0001704 ynfH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007185 dmsC2 CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0004237 dmsC2 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001806 ynfH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072829 ynfH CDS
Person Approved Go view Shigella flexneri 301 ABT-0087923 ynfH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001712 CDS
Person Approved Go view Shigella sonnei 046 ADD-0001706 ynfH CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22215mutantTn5 InsertionRequest the StrainABE-0005311ynfHb1590::Tn5KAN-I-SceI at position 693 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1658609 to 1669463
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005302ynfECDSforward16580691660495Upstream
ABE-0005307ynfFCDSforward16605561662979Upstream
ABE-0005309ynfGCDSforward16629901663607Upstream
ABE-0005311ynfHCDSforward16636091664463Matches
ABE-0005314dmsDCDSforward16645061665120Downstream
ABE-0285460repeat_regionforward16651361665166Downstream
ABE-0285729matS17protein_bindforward16651751665187Downstream
ABE-0005317clcBCDSforward16653151666571Downstream
ABE-0005319bidACDScomplement16665241667219Downstream
ABE-0005323mlcCDScomplement16673441668564Downstream
ABE-0005326ynfLCDScomplement16686991669592Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.