Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005352 (pntB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005352 showshow history
Names
pntB JW1594 ECK1597 b1602
Product
pyridine nucleotide transhydrogenase subunit beta
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1674972 1676360 1389 463
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000579
EnteroFam0005352: Trusted threshold=1302.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004003 (IPR004003 (DEPRECATED) NAD(P) transhydrogenase, beta subunit) Apr 2008
Automated Process Approved IPR012136 (IPR012136 NADP transhydrogenase, beta subunit) Apr 2008
Automated Process Approved IPR034300 (IPR034300 NADP transhydrogenase beta-like domain) Jul 2018
Automated Process Approved IPR029035 (IPR029035 DHS-like NAD/FAD-binding domain superfamily) Jul 2018
Automated Process Approved PF02233 (PF02233 NAD(P) transhydrogenase beta subunit) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004003
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pntB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1594 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1597 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1602 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product pyridine nucleotide transhydrogenase subunit beta Published Annotation - EcoCyc Accession Number: EG10745
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name pyridine nucleotide transhydrogenase (proton pump), beta subunit Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name pyridine nucleotide transhydrogenase, beta subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005352: Trusted threshold=1302.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000579
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004003 (DEPRECATED) NAD(P) transhydrogenase, beta subunit Protein Sequence Similarity - InterPro Domain: IPR004003
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012136 NADP transhydrogenase, beta subunit Protein Sequence Similarity - InterPro Domain: IPR012136
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR029035 DHS-like NAD/FAD-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR029035
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02233 NAD(P) transhydrogenase beta subunit Protein Sequence Similarity - PFAM Model Name: PF02233
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR034300 NADP transhydrogenase beta-like domain Protein Sequence Similarity - InterPro Domain: IPR034300
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.6.1.2 Published Annotation - Swiss-Prot Accession Number: P0AB67 Feb 2006
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.82 (transport; substrate; H+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.9.A (transport; Transporters of Unknown Classification; recognized transporters of unknown biochemical mechanism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AB67 Published Annotation - Swiss-Prot Accession Number: P0AB67 Jan 2006
Automated Process Approved db xref GI:1787886 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10745 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946144 Published Annotation - Entrez Gene Database ID: 946144
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AB67 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005352 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74674.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004003
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000579 pntB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001048 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001160 pntB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001351 pntB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001115 pntB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001454 pntB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002736 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001937 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001940 pntB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002217 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002180 pntB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002825 pntB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006864 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0047109 pntB CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002047 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002458 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004147 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005632 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001558 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010168 pntB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001525 CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002786 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007754 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005438 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006038 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078109 pntB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001805 pntB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002085 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008799 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008715 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001801 pntB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006246 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005691 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0009999 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009943 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008690 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007152 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008432 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010957 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009387 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010554 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009257 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008574 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009701 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026389 pntB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009608 pntB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006351 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002003 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001504 pntB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001644 pntB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001924 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001928 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002311 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001799 pntB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175946 pntB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001752 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001596 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132289 pntB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004277 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001797 pntB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001711 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002880 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001531 pntB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004367 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006582 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001348 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003695 pntB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001350 pntB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002741 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002057 pntB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002163 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009765 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001814 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290142 pntB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005184 pntB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062467 pntB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001404 pntB CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000564 pntB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003373 pntB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007006 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141782 pntB CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005549 pntB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005868 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001555 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001738 pntB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006131 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005123 pntB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004957 pntB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005002 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006011 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004947 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004994 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004458 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005078 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005956 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004831 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001383 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001375 pntB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001846 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006199 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006784 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005667 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004999 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108280 pntB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083114 pntB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001790 pntB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094937 pntB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007887 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005656 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008512 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003218 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267383 pntB CDS
Person Approved Go view Shigella boydii 227 ADV-0001692 pntB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007197 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004272 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001789 pntB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072841 pntB CDS
Person Approved Go view Shigella flexneri 301 ABT-0087934 pntB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001724 pntB CDS
Person Approved Go view Shigella sonnei 046 ADD-0001687 pntB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003454 VCA0564 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003983 pntB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001716 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006095 pntB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000988 pntB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000672 pntB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000464 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239280 pntB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006408 pntB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001993 pntB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004791 pntB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001156 pntB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122921 pntB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007067 pntB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007499 pntB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002512 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007964 pntB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005934 pntB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031841 pntB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008153 pntB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002122 pntB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001002 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007072 pntB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005802 pntB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002308 pntB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002736 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002295 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013972 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003722 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20378mutantTn5 InsertionRequest the StrainABE-0005352pntBpntB::Tn5KAN-2 at position 862 in Minus orientation ,+ pKD460Blattner Laboratory
FB20379mutantTn5 InsertionRequest the StrainABE-0005352pntBpntB::Tn5KAN-2 at position 862 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1669972 to 1681360
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005333ynfMCDSforward16696991670952Downstream
ABE-0005337asrCDSforward16713761671684Downstream
ABE-0285184ydgUCDSforward16717771671860Downstream
ABE-0005340ydgDCDSforward16719601672781Downstream
ABE-0005343mdtICDScomplement16728201673149Downstream
ABE-0005345mdtJCDScomplement16731361673501Downstream
ABE-0285779mdtUCDScomplement16736081673709Downstream
ABE-0005350tqsACDSforward16739131674947Downstream
ABE-0005352pntBCDScomplement16749721676360Matches
ABE-0005354pntACDScomplement16763711677903Upstream
ABE-0005359ydgHCDSforward16784271679371Upstream
ABE-0005362ydgICDSforward16795571680939Upstream
ABE-0005364folMCDSforward16809761681698Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.