Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005354 (pntA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005354 showshow history
Names
pntA JW1595 ECK1598 b1603
Product
pyridine nucleotide transhydrogenase subunit alpha
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1676371 1677903 1533 511
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000580
EnteroFam0005354: Trusted threshold=1441.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004571 (IPR004571 (DEPRECATED) NAD(P) transhydrogenase, alpha subunit) Apr 2008
Automated Process Approved IPR007886 (IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal) Apr 2008
Automated Process Approved IPR007698 (IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain) Apr 2008
Automated Process Approved IPR008142 (IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1) Apr 2008
Automated Process Approved IPR008143 (IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2) Apr 2008
Automated Process Approved IPR024605 (IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal) Jul 2018
Automated Process Approved IPR026255 (IPR026255 NAD(P) transhydrogenase, alpha subunit) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved PF01262 (PF01262 Alanine dehydrogenase/PNT, C-terminal domain) Jul 2018
Automated Process Approved PF05222 (PF05222 Alanine dehydrogenase/PNT, N-terminal domain) Jul 2018
Automated Process Approved PF12769 (PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007698
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:1902600 proton transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR026255
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR026255
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008746 NAD(P)+ transhydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR026255
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007886
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pntA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1598 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1595 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1603 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product pyridine nucleotide transhydrogenase subunit alpha Published Annotation - EcoCyc Accession Number: EG10744
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name pyridine nucleotide transhydrogenase (proton pump), alpha subunit Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name pyridine nucleotide transhydrogenase, alpha subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005354: Trusted threshold=1441.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000580
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Protein Sequence Similarity - InterPro Domain: IPR007698
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004571 (DEPRECATED) NAD(P) transhydrogenase, alpha subunit Protein Sequence Similarity - InterPro Domain: IPR004571
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 Protein Sequence Similarity - InterPro Domain: IPR008142
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR007886
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 Protein Sequence Similarity - InterPro Domain: IPR008143
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF05222 Alanine dehydrogenase/PNT, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF05222
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Protein Sequence Similarity - PFAM Model Name: PF12769
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01262 Alanine dehydrogenase/PNT, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF01262
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal Protein Sequence Similarity - InterPro Domain: IPR024605
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR026255 NAD(P) transhydrogenase, alpha subunit Protein Sequence Similarity - InterPro Domain: IPR026255
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.6.1.- Published Annotation - Database Name: EC2GO: GO:0008746
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.6.1.2 Published Annotation - Swiss-Prot Accession Number: P07001 Feb 2006
Person Uncurated MultiFun 4.S.82 (transport; substrate; H+) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.9.A (transport; Transporters of Unknown Classification; recognized transporters of unknown biochemical mechanism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005354 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07001 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P07001 Published Annotation - Swiss-Prot Accession Number: P07001 Jan 2005
Automated Process Approved db xref GeneID:946628 Published Annotation - Entrez Gene Database ID: 946628
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787887 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10744 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74675.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR026255
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:1902600 proton transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR026255
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007698
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0008746 NAD(P)+ transhydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR026255
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007886
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000580 pntA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001047 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001424 pntA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001392 pntA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001114 pntA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001234 pntA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002735 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001936 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001939 pntA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002218 pntA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002179 pntA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002824 pntA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006863 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014633 pntA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002048 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002457 pntA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004148 pntA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005633 pntA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001559 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010169 pntA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001526 pntA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002785 pntA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007753 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005439 pntA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006037 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078110 pntA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001806 pntA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002086 pntA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008800 pntA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008716 pntA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001802 pntA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006247 pntA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001783 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005692 pntA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010000 pntA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009944 pntA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008689 pntA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007153 pntA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008433 pntA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010956 pntA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009386 pntA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010555 pntA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009256 pntA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008575 pntA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009702 pntA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026390 pntA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0009607 pntA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006352 pntA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002004 pntA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001505 pntA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001645 pntA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001923 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001927 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002310 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001800 pntA CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175947 pntA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001753 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001595 pntA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132290 pntA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004276 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001798 pntA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001712 pntA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002879 pntA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001530 pntA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004366 pntA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006581 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001349 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003694 pntA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001351 pntA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002740 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002058 pntA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002162 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009766 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001813 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0290143 pntA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005185 pntA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062466 pntA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001403 pntA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000563 pntA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003372 pntA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007007 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0141779 pntA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005869 pntA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001556 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001737 pntA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006132 pntA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005126 pntA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0004960 pntA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005003 pntA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0006010 pntA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004946 pntA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004993 pntA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004457 pntA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005077 pntA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005955 pntA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004832 pntA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001384 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001376 pntA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001847 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006198 pntA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006785 pntA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005666 pntA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004998 pntA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108282 pntA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083113 pntA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001789 pntA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094934 pntA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007888 pntA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005655 pntA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008511 pntA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003217 pntA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267382 pntA CDS
Person Approved Go view Shigella boydii 227 ADV-0001691 pntA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007198 pntA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004273 pntA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001788 pntA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072842 pntA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087935 pntA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001725 pntA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001686 pntA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003453 VCA0563 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003981 pntA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001717 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006099 pntA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000987 pntA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000673 pntA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000465 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239290 pntA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006409 pntA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001995 pntA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004792 pntA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001155 pntA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122923 pntA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007066 pntA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007498 pntA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002513 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007963 pntA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005933 pntA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031842 pntA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008152 pntA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002124 pntA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001001 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007071 pntA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005801 pntA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002309 pntA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002738 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002294 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0013975 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003721 pntA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20380mutantTn5 InsertionRequest the StrainABE-0005354pntApntA::Tn5KAN-2 at position 113 in Minus orientation ,+ pKD460Blattner Laboratory
FB20381mutantTn5 InsertionRequest the StrainABE-0005354pntApntA::Tn5KAN-2 at position 113 in Minus orientation ,- pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1671371 to 1682903
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005337asrCDSforward16713761671684Downstream
ABE-0285184ydgUCDSforward16717771671860Downstream
ABE-0005340ydgDCDSforward16719601672781Downstream
ABE-0005343mdtICDScomplement16728201673149Downstream
ABE-0005345mdtJCDScomplement16731361673501Downstream
ABE-0285779mdtUCDScomplement16736081673709Downstream
ABE-0005350tqsACDSforward16739131674947Downstream
ABE-0005352pntBCDScomplement16749721676360Downstream
ABE-0005354pntACDScomplement16763711677903Matches
ABE-0005359ydgHCDSforward16784271679371Upstream
ABE-0005362ydgICDSforward16795571680939Upstream
ABE-0005364folMCDSforward16809761681698Upstream
ABE-0005366ydgCCDScomplement16816951682030Upstream
ABE-0005370rstACDSforward16821591682878Upstream
ABE-0005372rstBCDSforward16828821684183Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.