Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005398 (manA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005398 showshow history
Names
manA JW1605 ECK1608 pmi b1613
Product
mannose-6-phosphate isomerase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1688576 1689751 1176 392
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000587
EnteroFam0005398: Trusted threshold=988.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR001250 (IPR001250 Mannose-6-phosphate isomerase, type I) Apr 2008
Automated Process Approved IPR011051 (IPR011051 RmlC-like cupin domain superfamily) Apr 2008
Automated Process Approved IPR014710 (IPR014710 RmlC-like jelly roll fold) Apr 2008
Automated Process Approved IPR016305 (IPR016305 Mannose-6-phosphate isomerase) Jul 2018
Automated Process Approved PF01238 (PF01238 Phosphomannose isomerase type I) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0009298 GDP-mannose biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016305
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0009269 response to desiccation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001250
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO biological process GO:0009242 colanic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009226 nucleotide-sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001250
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0004476 mannose-6-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001250
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name manA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655
Sep 2007
Person Approved synonym JW1605 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1608 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym pmi Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved locus tag b1613 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product mannose-6-phosphate isomerase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name mannose-6-phosphate isomerase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005398: Trusted threshold=988.5; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000587
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family PF01238 Phosphomannose isomerase type I Protein Sequence Similarity - PFAM Model Name: PF01238
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR016305 Mannose-6-phosphate isomerase Protein Sequence Similarity - InterPro Domain: IPR016305
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR014710 RmlC-like jelly roll fold Protein Sequence Similarity - InterPro Domain: IPR014710
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR011051 RmlC-like cupin domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011051
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR001250 Mannose-6-phosphate isomerase, type I Protein Sequence Similarity - InterPro Domain: IPR001250
Reference: Escherichia coli K-12 MG1655
Apr 2008
Other
Person Approved EC number 5.3.1.8 Published Annotation - Swiss-Prot Accession Number: P00946 Feb 2006
Person Uncurated MultiFun 1.7.10 (metabolism; central intermediary metabolism; sugar nucleotide biosynthesis, conversions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.6.2 (metabolism; macromolecules (cellular constituent) biosynthesis; colanic acid (M antigen)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.5.5 (cell processes; adaptation to stress; dessication) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.7 (cell structure; capsule (M and K antigens)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:944840 Published Annotation - Entrez Gene Database ID: 944840
Reference: Escherichia coli K-12 MG1655
Jun 2009
Person Approved db xref UniProtKB:P00946 Published Annotation - Swiss-Prot Accession Number: P00946 Jan 2005
Automated Process Approved db xref GI:1787899 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P00946 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG10566 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref ASAP:ABE-0005398 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009226 - nucleotide-sugar biosynthetic process; GO_process: GO:0009242 - colanic acid biosynthetic process; GO_process: GO:0009269 - response to desiccation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC74685.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655
Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655
Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009269 response to desiccation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0009298 GDP-mannose biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR016305
Reference: Escherichia coli K-12 MG1655
Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009226 nucleotide-sugar biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009242 colanic acid biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001250
Reference: Escherichia coli K-12 MG1655
Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0030113 (DEPRECATED) capsule (sensu Bacteria) Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004476 mannose-6-phosphate isomerase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001250
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved GO molecular function GO:0008270 zinc ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001250
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000587 manA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001057 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001316 manA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001533 manA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001372 manA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001592 manA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002763 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0001969 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001930 manA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002228 manA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002169 manA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002808 manA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006930 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020751 manA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001988 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002445 manA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004160 manA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005643 manA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001569 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010179 manA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001536 manA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002775 manA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007739 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005449 manA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006027 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078120 manA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001816 manA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002096 manA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008810 manA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008726 manA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001812 manA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006258 manA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001793 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005702 manA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010010 manA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009954 manA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008679 manA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007163 manA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008443 manA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010945 manA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009374 manA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010565 manA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009245 manA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008585 manA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009712 manA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026400 manA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008641 manA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006363 manA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002014 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001515 manA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001655 manA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001912 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001968 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002299 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001810 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175960 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001763 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001585 manA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132300 manA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004266 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001808 manA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001612 manA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002924 manA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001519 manA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004352 manA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006630 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001183 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003917 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001194 manA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002921 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001895 manA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002331 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009516 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002596 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289251 manA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005020 manA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062527 manA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001422 manA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001777 manA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006921 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142237 manA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005881 manA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001568 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001718 manA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006145 manA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005170 manA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005002 manA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008918 manA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005998 manA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004934 manA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004980 manA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004445 manA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005065 manA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005943 manA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004845 manA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001396 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001388 manA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001863 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006186 manA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006797 manA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005653 manA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004985 manA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108373 manA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083049 manA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001771 manA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094897 manA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007901 manA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005643 manA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008360 manA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003526 manA CDS
Person Approved Go view Shigella boydii 227 ADV-0001681 manA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007208 manA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004283 manA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002112 manA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072854 manA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087947 manA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001736 manA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001676 manA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001901 VC1827 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004149 manA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003479 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005936 manA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002995 manA_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000608 manA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000411 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239224 manA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006382 manA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001962 manA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004760 manA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001194 manA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122796 manA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007095 manA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007657 manA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003669 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007447 manA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005963 manA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031812 manA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005711 manA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002090 manA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001037 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007100 manA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005845 manA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002269 manA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002680 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002349 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014025 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003709 manA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20388mutantTn5 InsertionRequest the StrainABE-0005398manAmanA::Tn5KAN-2 at position 1014 in Plus orientation ,- pKD460Blattner Laboratory
FB20389mutantTn5 InsertionRequest the StrainABE-0005398manAmanA::Tn5KAN-2 at position 1014 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1683576 to 1694751
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005372rstBCDSforward16828821684183Upstream
ABE-0005378tusCDSforward16842591685188Upstream
ABE-0005380fumCCDScomplement16851851686588Upstream
ABE-0005392fumACDScomplement16867311688377Upstream
ABE-0005398manACDSforward16885761689751Matches
ABE-0005402ydgACDSforward16898521691360Downstream
ABE-0285461repeat_regionforward16914251691521Downstream
ABE-0005405uidCCDScomplement16915861692851Downstream
ABE-0005407uidBCDScomplement16928901694263Downstream
ABE-0005410uidACDScomplement16942601696071Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.