Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005407 (uidB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005407 showshow history
Names
uidB JW1608 ECK1611 uidP gusB b1616
Product
glucuronide transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1692890 1694263 1374 458
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001927 (IPR001927 Sodium:galactoside symporter) Apr 2008
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Apr 2008
Automated Process Approved IPR001209 (IPR001209 Ribosomal protein S14) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF13347 (PF13347 MFS/sugar transport protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001209
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005840 ribosome GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001209
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001209
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0003735 structural constituent of ribosome GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001209
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name uidB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym uidP Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym gusB Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK1611 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1608 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1616 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product glucuronide transporter Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name glucuronide transport protein (GPH family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name glucuronide permease Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family PF13347 MFS/sugar transport protein Protein Sequence Similarity - PFAM Model Name: PF13347
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001209 Ribosomal protein S14 Protein Sequence Similarity - InterPro Domain: IPR001209
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001927 Sodium:galactoside symporter Protein Sequence Similarity - InterPro Domain: IPR001927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.73 (transport; substrate; glucuronide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.2 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11658 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0CE44 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P30868 Published Annotation - Swiss-Prot Accession Number: P30868 Jan 2005
Automated Process Approved db xref GeneID:947484 Published Annotation - Entrez Gene Database ID: 947484
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787902 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005407 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Carbohydrates, organic acids, alcohols Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note glucuronide permease; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74688.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001209
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0019866 organelle inner membrane Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005622 intracellular anatomical structure GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001209
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005840 ribosome GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001209
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001927
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003735 structural constituent of ribosome GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001209
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003480 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003932 uidB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004577 uidB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003576 uidB CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005646 uidB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001572 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010182 uidB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001539 uidB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002772 CDS
Person Uncurated Go view Escherichia coli ATCC 8739 AEM-0007734 uidB pseudogene
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005452 uidB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006024 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078123 uidB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001819 uidB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002099 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008813 uidB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008729 uidB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001815 uidB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006261 uidB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001798 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005706 uidB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010014 uidB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009958 uidB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008676 uidB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007167 uidB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008446 uidB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010941 uidB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009370 uidB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010569 uidB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009241 uidB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008589 uidB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009716 uidB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026404 uidB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008638 uidB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006366 uidB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002017 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001518 uidB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001658 uidB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001909 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001971 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001813 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175963 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001766 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001582 uidB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132304 uidB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004262 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001811 uidB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005696 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007385 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007306 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0001678 uidB CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0002121 uidB CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0087950 uidB pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0001673 uidB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20390mutantTn5 InsertionRequest the StrainABE-0005407uidBuidB::Tn5KAN-2 at position 333 in Plus orientation ,- pKD460Blattner Laboratory
FB20391mutantTn5 InsertionRequest the StrainABE-0005407uidBuidB::Tn5KAN-2 at position 333 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1687890 to 1699263
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005392fumACDScomplement16867311688377Downstream
ABE-0005398manACDSforward16885761689751Downstream
ABE-0005402ydgACDSforward16898521691360Downstream
ABE-0285461repeat_regionforward16914251691521Downstream
ABE-0005405uidCCDScomplement16915861692851Downstream
ABE-0005407uidBCDScomplement16928901694263Matches
ABE-0005410uidACDScomplement16942601696071Overlaps Upstream
ABE-0005415uidRCDScomplement16964621697052Upstream
ABE-0005419hdhACDScomplement16972731698040Upstream
ABE-0005421malICDScomplement16981521699180Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.