Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005410 (uidA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005410 showshow history
Names
uidA JW1609 ECK1612 gusA gurA b1617
Product
beta-D-glucuronidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1694260 1696071 1812 604
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008979 (IPR008979 Galactose-binding-like domain superfamily) Apr 2008
Automated Process Approved IPR006102 (IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich) Apr 2008
Automated Process Approved IPR006104 (IPR006104 Glycosyl hydrolases family 2, sugar binding domain) Apr 2008
Automated Process Approved IPR006103 (IPR006103 Glycoside hydrolase family 2, catalytic domain) Apr 2008
Automated Process Approved IPR006101 (IPR006101 Glycoside hydrolase, family 2) Apr 2008
Automated Process Approved IPR013812 (IPR013812 (DEPRECATED) Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain) Apr 2008
Automated Process Approved IPR013781 (IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain) Apr 2008
Automated Process Approved IPR036156 (IPR036156 Beta-Galactosidase/glucuronidase domain superfamily) Jul 2018
Automated Process Approved IPR017853 (IPR017853 Glycoside hydrolase superfamily) Jul 2018
Automated Process Approved PF00703 (PF00703 Glycosyl hydrolases family 2) Jul 2018
Automated Process Approved PF02836 (PF02836 Glycosyl hydrolases family 2, TIM barrel domain) Jul 2018
Automated Process Approved PF02837 (PF02837 Glycosyl hydrolases family 2, sugar binding domain) Jul 2018
Automated Process Uncurated GH2 (GH2 Glycoside Hydrolase Family 2) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006102
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006102
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name uidA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym gurA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK1612 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym gusA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW1609 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1617 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product beta-D-glucuronidase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name beta-D-glucuronidase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR006101 Glycoside hydrolase, family 2 Protein Sequence Similarity - InterPro Domain: IPR006101
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006103 Glycoside hydrolase family 2, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR006103
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006104 Glycosyl hydrolases family 2, sugar binding domain Protein Sequence Similarity - InterPro Domain: IPR006104
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR008979 Galactose-binding-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008979
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich Protein Sequence Similarity - InterPro Domain: IPR006102
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013812 (DEPRECATED) Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain Protein Sequence Similarity - InterPro Domain: IPR013812
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036156 Beta-Galactosidase/glucuronidase domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036156
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02836 Glycosyl hydrolases family 2, TIM barrel domain Protein Sequence Similarity - PFAM Model Name: PF02836
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00703 Glycosyl hydrolases family 2 Protein Sequence Similarity - PFAM Model Name: PF00703
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02837 Glycosyl hydrolases family 2, sugar binding domain Protein Sequence Similarity - PFAM Model Name: PF02837
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated protein family GH2 Glycoside Hydrolase Family 2 Protein Sequence Similarity - CAZy Model Name: GH2
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017853 Glycoside hydrolase superfamily Protein Sequence Similarity - InterPro Domain: IPR017853
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013781 (DEPRECATED) Glycoside hydrolase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.2.1.- Published Annotation - Database Name: EC2GO: GO:0004553
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.2.1.31 Published Annotation - Swiss-Prot Accession Number: P05804 Feb 2006
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005410 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946149 Published Annotation - Entrez Gene Database ID: 946149
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P05804 Published Annotation - Swiss-Prot Accession Number: P05804 Jan 2005
Automated Process Approved db xref EcoGene:EG11055 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P05804 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787903 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Carbon compounds Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0016052 - carbohydrate catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74689.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006102
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0043169 cation binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013781
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006102
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004265 uidA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004686 uidA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0009787 uidA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003574 uidA CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005647 uidA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001573 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010183 uidA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001540 uidA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002771 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0007733 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005453 uidA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006023 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078124 uidA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001820 uidA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002100 gusB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008814 uidA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008730 uidA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001816 uidA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006262 uidA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0285148 uidA pseudogene
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008637 uidA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006367 uidA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002018 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001519 uidA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001659 uidA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0001908 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001972 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001814 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175964 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001767 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001581 uidA CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001812 uidA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003180 CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002581 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0005695 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0007384 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0007305 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007213 uidA CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0072859 uidA CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0255990 uidA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001740 uidA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001672 uidA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1689260 to 1701071
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005398manACDSforward16885761689751Downstream
ABE-0005402ydgACDSforward16898521691360Downstream
ABE-0285461repeat_regionforward16914251691521Downstream
ABE-0005405uidCCDScomplement16915861692851Downstream
ABE-0005407uidBCDScomplement16928901694263Overlaps Downstream
ABE-0005410uidACDScomplement16942601696071Matches
ABE-0005415uidRCDScomplement16964621697052Upstream
ABE-0005419hdhACDScomplement16972731698040Upstream
ABE-0005421malICDScomplement16981521699180Upstream
ABE-0005429malXCDSforward16993551700947Upstream
ABE-0005432malYCDSforward17009571702129Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.