Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005469 (dtpA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005469 showshow history
Names
dtpA JW1626 ECK1630 tppB ydgR b1634
Product
dipeptide/tripeptide:proton symporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1712769 1714271 1503 501
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005279 (IPR005279 Dipeptide/tripeptide permease) Apr 2008
Automated Process Approved IPR000109 (IPR000109 Proton-dependent oligopeptide transporter family) Apr 2008
Automated Process Approved IPR007114 (IPR007114 (DEPRECATED) Major facilitator superfamily) Apr 2008
Automated Process Approved IPR000560 (IPR000560 Histidine phosphatase superfamily, clade-2) Apr 2008
Automated Process Approved IPR036259 (IPR036259 MFS transporter superfamily) Jul 2018
Automated Process Approved PF00854 (PF00854 POT family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005279
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006857 oligopeptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:1904680 peptide transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005279
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003993 acid phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000560
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dtpA Published Annotation - PubMed ID: 18485005
Reference: Escherichia coli 		Apr 2009
Person Approved synonym tppB Published Sequence Analysis - PubMed ID: 15175316
Reference: Escherichia coli K-12 MG1655 		Dec 2005
Person Approved synonym ydgR Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1630 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1626 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1634 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product dipeptide/tripeptide:proton symporter Experimental - PubMed ID: 18485005
Reference: Escherichia coli 		Apr 2020
Person Uncurated alternate product name putative peptide transport protein (POT family) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative transport protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name dipeptide and tripeptide permease A Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name proton-dependent peptide transporter Experimental - PubMed ID: 17158458
Reference: Escherichia coli 		Apr 2020
Protein Family
Automated Process Approved protein family IPR000560 Histidine phosphatase superfamily, clade-2 Protein Sequence Similarity - InterPro Domain: IPR000560
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036259 MFS transporter superfamily Protein Sequence Similarity - InterPro Domain: IPR036259
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00854 POT family Protein Sequence Similarity - PFAM Model Name: PF00854
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR007114 (DEPRECATED) Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005279 Dipeptide/tripeptide permease Protein Sequence Similarity - InterPro Domain: IPR005279
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000109 Proton-dependent oligopeptide transporter family Protein Sequence Similarity - InterPro Domain: IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated EC number 3.1.3.- Protein Sequence Similarity - InterPro Domain: IPR000560
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.152 (transport; substrate; peptide) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.2.A.17 (transport; Electrochemical potential driven transporters; Porters (Uni-, Sym- and Antiporters); The Proton-dependent Oligopeptide Transporter (POT) Family) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787922 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77304 Published Annotation - Swiss-Prot Accession Number: P77304 Jan 2005
Automated Process Approved db xref ASAP:ABE-0005469 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:947436 Published Annotation - Entrez Gene Database ID: 947436
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref EcoGene:EG13939 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77304 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative transport; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative transport protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved note interaction of ompR with tppB promoter is stimulated by acetyl phosphate in DNAse I footprinting assays, indicating that phosphorylated ompR may have increased binding ability Experimental - PubMed ID: 15175316
Reference: Escherichia coli K-12 MG1655 		Dec 2005
Person Approved note promoter bound by ompR in DNAse I footprinting assays Experimental - PubMed ID: 15175316
Reference: Escherichia coli K-12 MG1655 		Dec 2005
Automated Process Approved protein id AAC74706.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved regulation expression regulated by envZ; expression is reduced in envZ null mutant Experimental - PubMed ID: 15175316
Reference: Escherichia coli 		Mar 2006
Person Approved regulation expression regulated by envZ; expression is greatly reduced in envZ343 mutant which lacks envZ kinase activity Experimental - PubMed ID: 15175316
Reference: Escherichia coli 		Mar 2006
Person Approved regulation expression regulated by oxygen; expression is modestly induced under anaerobic conditions Experimental - PubMed ID: 15175316
Reference: Escherichia coli K-12 MG1655 		Dec 2005
Person Approved regulation expression regulated by ompR; expression is greatly reduced in ompR null mutant Experimental - PubMed ID: 15175316
Reference: Escherichia coli K-12 MG1655 		Dec 2005
Person Approved regulation expression regulated by ompR; expression is reduced in ompR472-[V203M] mutant Experimental - PubMed ID: 15175316
Reference: Escherichia coli K-12 MG1655 		Dec 2005
Person Approved regulation expression regulated by ompR; expression is reduced in ompR107-[R15C] mutant Experimental - PubMed ID: 15175316
Reference: Escherichia coli K-12 MG1655 		Dec 2005
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0055085 transmembrane transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0015833 peptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005279
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006857 oligopeptide transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007114
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0022857 transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000109
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:1904680 peptide transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005279
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003993 acid phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000560
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Homolog
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264842 CDS
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003201 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001856 tppB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001808 dtpA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001426 tppB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001856 dtpA CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002327 dtpA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002260 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002152 tppB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002792 tppB CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002419 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301361 tppB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001876 ydgR CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001844 tppB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004179 tppB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005664 tppB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001591 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010201 tppB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001557 ydgR CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002753 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007711 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005471 tppB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006005 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078141 tppB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001839 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002119 tppB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008832 tppB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008748 tppB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001836 tppB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006281 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001817 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005725 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010033 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009977 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008657 tppB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007186 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008465 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010921 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009351 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010588 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009221 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008609 tppB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009736 tppB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026423 tppB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008619 dtpA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006385 tppB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002036 tppB CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001536 tppB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001677 ydgR CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002440 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001992 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002275 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001832 tppB CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175988 tppB CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001786 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001564 tppB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132324 tppB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004243 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001832 ydgR CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002015 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002952 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001977 ydgR CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004333 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001151 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003948 tppB CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001144 tppB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002978 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001841 tppB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002385 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009481 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002564 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289322 tppB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004991 ydgR CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062547 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004334 tppB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002876 tppB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000570 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006892 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005896 tppB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001589 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001703 tppB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006159 tppB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005226 ydgR CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005057 ydgR CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008931 tppB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005985 tppB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004921 tppB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004963 tppB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004430 tppB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005050 tppB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005929 tppB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004860 tppB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001411 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001401 tppB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001880 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006172 tppB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006812 tppB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005636 tppB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004968 tppB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108406 tppB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083034 tppB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001752 tppB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094860 tppB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007915 tppB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005627 tppB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008346 tppB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003552 CDS
Person Approved Go view Shigella boydii 227 ADV-0001657 ydgR CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007233 tppB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004302 tppB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002145 ydgR CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072880 tppB CDS
Person Approved Go view Shigella flexneri 301 ABT-0087969 tppB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001759 ydgR CDS
Person Approved Go view Shigella sonnei 046 ADD-0001652 tppB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001056 VC0988 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000525 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006259 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000936 tppB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000718 tppB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002032 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239426 tppB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006662 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002067 tppB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004852 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001099 tppB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123103 tppB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007006 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006710 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002263 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007904 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006104 CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031673 tppB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008093 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002195 tppB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000928 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007006 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005748 CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002362 tppB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002805 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002225 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014087 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003691 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1707769 to 1719271
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005454rsxCCDSforward17069191709141Upstream
ABE-0005457rsxDCDSforward17091421710200Upstream
ABE-0005459rsxGCDSforward17102041710824Upstream
ABE-0005461rsxECDSforward17108281711523Upstream
ABE-0005463nthCDSforward17115231712158Upstream
ABE-0285018protein_bindforward17126141712640Upstream
ABE-0285020tppB-35_signalforward17126381712643Upstream
ABE-0285019tppB-10_signalforward17126601712665Upstream
ABE-0285017tppB5'UTRforward17126711712768Upstream
ABE-0005469dtpACDSforward17127691714271Matches
ABE-0005473gstACDSforward17143771714982Downstream
ABE-0005475pdxYCDScomplement17150261715889Downstream
ABE-0005477tyrSCDScomplement17159481717222Downstream
ABE-0005482pdxHCDScomplement17173511718007Downstream
ABE-0005485mliCCDScomplement17180661718395Downstream
ABE-0005488anmKCDScomplement17184931719602Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.