Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005477 (tyrS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005477 showshow history
Names
tyrS JW1629 ECK1633 b1637
Product
tyrosyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1715948 1717222 1275 425
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000599
EnteroFam0005477: Trusted threshold=1243.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002307 (IPR002307 Tyrosine-tRNA ligase) Apr 2008
Automated Process Approved IPR002305 (IPR002305 Aminoacyl-tRNA synthetase, class Ic) Apr 2008
Automated Process Approved IPR002942 (IPR002942 RNA-binding S4 domain) Apr 2008
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Apr 2008
Automated Process Approved IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site) Apr 2008
Automated Process Approved IPR024088 (IPR024088 Tyrosine-tRNA ligase, bacterial-type) Jul 2018
Automated Process Approved PF00579 (PF00579 tRNA synthetases class I (W and Y)) Jul 2018
Automated Process Approved PF01479 (PF01479 S4 domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002305
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006437 tyrosyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002305, IPR002307
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003723 RNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002942
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004831 tyrosine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002305
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name tyrS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1633 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1629 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1637 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product tyrosyl-tRNA synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name tyrosine tRNA synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005477: Trusted threshold=1243.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000599
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR002307 Tyrosine-tRNA ligase Protein Sequence Similarity - InterPro Domain: IPR002307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002305 Aminoacyl-tRNA synthetase, class Ic Protein Sequence Similarity - InterPro Domain: IPR002305
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00579 tRNA synthetases class I (W and Y) Protein Sequence Similarity - PFAM Model Name: PF00579
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01479 S4 domain Protein Sequence Similarity - PFAM Model Name: PF01479
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR024088 Tyrosine-tRNA ligase, bacterial-type Protein Sequence Similarity - InterPro Domain: IPR024088
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Protein Sequence Similarity - InterPro Domain: IPR001412
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002942 RNA-binding S4 domain Protein Sequence Similarity - InterPro Domain: IPR002942
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 6.1.1.- Published Annotation - Database Name: EC2GO: GO:0004812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 6.1.1.1 Published Annotation - Swiss-Prot Accession Number: P0AGJ9 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005477 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGJ9 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AGJ9 Published Annotation - Swiss-Prot Accession Number: P0AGJ9 Jan 2006
Automated Process Approved db xref GeneID:948855 Published Annotation - Entrez Gene Database ID: 948855
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787925 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11043 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note tyrosine tRNA synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74709.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002305
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006437 tyrosyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002305
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002305, IPR002307
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0003723 RNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002942
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004831 tyrosine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002307
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000599 tyrS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001128 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000519 tyrS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000399 tyrS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001085 tyrS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000890 tyrS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001393 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002122 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129391 tyrS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104841 tyrS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104228 tyrS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002331 tyrS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002263 tyrS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002149 tyrS CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002789 tyrS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006453 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014601 tyrS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002405 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002416 tyrS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301353 tyrS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001872 tyrS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001847 tyrS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004182 tyrS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005667 tyrS CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010204 tyrS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001560 tyrS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002750 tyrS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007708 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005474 tyrS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006002 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078144 tyrS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001842 tyrS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002122 tyrS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008835 tyrS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008751 tyrS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001839 tyrS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006284 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001820 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005728 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010036 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009980 tyrS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007189 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008468 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010918 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010591 tyrS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009739 tyrS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026426 tyrS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008616 tyrS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006388 tyrS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002039 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001539 tyrS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001680 tyrS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002437 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001995 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002272 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001835 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001789 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001561 tyrS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132327 tyrS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004240 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001835 tyrS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002024 tyrS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002958 tyrS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001981 tyrS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004330 tyrS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006378 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001148 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003951 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001141 tyrS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002981 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001838 tyrS CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002388 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009475 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002561 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289325 tyrS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004988 tyrS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062197 tyrS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001006 tyrS CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000502 tyrS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002763 tyrS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007334 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142798 tyrS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005899 tyrS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001594 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001700 tyrS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006163 tyrS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005237 tyrS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005068 tyrS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008934 tyrS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005982 tyrS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004918 tyrS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004960 tyrS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004427 tyrS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005047 tyrS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005926 tyrS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004863 tyrS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001414 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001404 tyrS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001883 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006169 tyrS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006815 tyrS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005633 tyrS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004965 tyrS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108414 tyrS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083031 tyrS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001749 tyrS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094852 tyrS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007918 tyrS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005624 tyrS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008343 tyrS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003569 tyrS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264881 tyrS CDS
Person Approved Go view Shigella boydii 227 ADV-0001654 tyrS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007238 tyrS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007086 tyrS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002148 tyrS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072883 tyrS CDS
Person Approved Go view Shigella flexneri 301 ABT-0087972 tyrS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001762 tyrS CDS
Person Approved Go view Shigella sonnei 046 ADD-0001646 tyrS CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0001503 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000513 VC0465 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135844 tyrS CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000511 tyrS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003369 tyrS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000530 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006272 tyrS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000928 tyrS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000723 tyrS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002038 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239450 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006668 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002072 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004857 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001092 tyrS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123144 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007001 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006715 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002257 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007896 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006109 tyrS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031668 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008085 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002200 tyrS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000923 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007001 tyrS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005743 tyrS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002367 tyrS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002810 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002220 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014108 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003688 tyrS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1710948 to 1722222
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005461rsxECDSforward17108281711523Downstream
ABE-0005463nthCDSforward17115231712158Downstream
ABE-0285018protein_bindforward17126141712640Downstream
ABE-0285020tppB-35_signalforward17126381712643Downstream
ABE-0285019tppB-10_signalforward17126601712665Downstream
ABE-0285017tppB5'UTRforward17126711712768Downstream
ABE-0005469dtpACDSforward17127691714271Downstream
ABE-0005473gstACDSforward17143771714982Downstream
ABE-0005475pdxYCDScomplement17150261715889Downstream
ABE-0005477tyrSCDScomplement17159481717222Matches
ABE-0005482pdxHCDScomplement17173511718007Upstream
ABE-0005485mliCCDScomplement17180661718395Upstream
ABE-0005488anmKCDScomplement17184931719602Upstream
ABE-0005493slyBCDSforward17198761720343Upstream
ABE-0005495slyACDScomplement17203901720824Upstream
ABE-0005499ydhICDSforward17210251721261Upstream
ABE-0005501ydhJCDSforward17212641722121Upstream
ABE-0005503ydhKCDSforward17221211724133Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.