Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005482 (pdxH) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005482 showshow history
Names
pdxH JW1630 ECK1634 b1638
Product
pyridoxine 5'-phosphate oxidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1717351 1718007 657 219
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000600
EnteroFam0005482: Trusted threshold=407.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000659 (IPR000659 Pyridoxamine 5'-phosphate oxidase) Apr 2008
Automated Process Approved IPR009002 (IPR009002 (DEPRECATED) FMN-binding split barrel-related) Apr 2008
Automated Process Approved IPR011576 (IPR011576 Pyridoxamine 5'-phosphate oxidase, putative) Apr 2008
Automated Process Approved IPR012349 (IPR012349 FMN-binding split barrel) Apr 2008
Automated Process Approved IPR019576 (IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal) Jul 2018
Automated Process Approved PF01243 (PF01243 Pyridoxamine 5'-phosphate oxidase) Jul 2018
Automated Process Approved PF10590 (PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008615 pyridoxine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000659
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009443 pyridoxal 5'-phosphate salvage Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004733 pyridoxamine-phosphate oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000659
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pdxH Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1634 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1630 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1638 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product pyridoxine 5'-phosphate oxidase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name pyridoxine 5'-phosphate oxidase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name pyridoxinephosphate oxidase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005482: Trusted threshold=407.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000600
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR000659 Pyridoxamine 5'-phosphate oxidase Protein Sequence Similarity - InterPro Domain: IPR000659
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012349 FMN-binding split barrel Protein Sequence Similarity - InterPro Domain: IPR012349
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009002 (DEPRECATED) FMN-binding split barrel-related Protein Sequence Similarity - InterPro Domain: IPR009002
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011576 Pyridoxamine 5'-phosphate oxidase, putative Protein Sequence Similarity - InterPro Domain: IPR011576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01243 Pyridoxamine 5'-phosphate oxidase Protein Sequence Similarity - PFAM Model Name: PF01243
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Protein Sequence Similarity - PFAM Model Name: PF10590
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal Protein Sequence Similarity - InterPro Domain: IPR019576
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.4.3.5 Published Annotation - Swiss-Prot Accession Number: P0AFI7 Feb 2006
Person Uncurated MultiFun 1.7.27 (metabolism; central intermediary metabolism; pyridoxal 5'-phosphate salvage) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.6 (metabolism; building block biosynthesis; cofactor, small molecule carrier; pyridoxine (vitamin B6)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005482 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946806 Published Annotation - Entrez Gene Database ID: 946806
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFI7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787926 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11487 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AFI7 Published Annotation - Swiss-Prot Accession Number: P0AFI7 Jan 2006
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Pyridoxine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note pyridoxinephosphate oxidase; GO_process: GO:0008615 - pyridoxine biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74710.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Approved GO biological process GO:0008615 pyridoxine biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009443 pyridoxal 5'-phosphate salvage Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008615 pyridoxine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000659
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004733 pyridoxamine-phosphate oxidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000659
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0010181 FMN binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011576
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000600 pdxH CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001919 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000598 pdxH CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000570 pdxH CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001559 pdxH CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000271 pdxH CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001392 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002123 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002332 pdxH CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002264 pdxH CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002148 pdxH CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002788 pdxH CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006452 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014600 pdxH pseudogene
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002406 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002415 pdxH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301350 pdxH CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001871 pdxH CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001848 pdxH CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004183 pdxH CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005668 pdxH CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001596 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010205 pdxH CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001561 pdxH CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002749 pdxH CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007707 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005475 pdxH CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006001 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078145 pdxH CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001843 pdxH CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002123 pdxH CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008836 pdxH CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008752 pdxH CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001840 pdxH CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006285 pdxH CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001821 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005729 pdxH CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010037 pdxH CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009981 pdxH CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010816 pdxH CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007190 pdxH CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008469 pdxH CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010917 pdxH CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0011000 pdxH CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010592 pdxH CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010710 pdxH CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009740 pdxH CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026427 pdxH CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008615 pdxH CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006389 pdxH CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002040 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001540 pdxH CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001681 pdxH CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002436 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0001996 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002271 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001836 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0175993 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001790 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001560 pdxH CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132328 pdxH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004239 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001836 pdxH CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002025 pdxH CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002959 pdxH CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001982 pdxH CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004329 pdxH CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006377 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001147 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003952 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001140 pdxH CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002982 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001837 pdxH CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002389 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009474 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002560 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289326 pdxH CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004987 pdxH CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062196 pdxH CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001004 pdxH CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000501 pdxH CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002761 pdxH CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007335 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142800 pdxH CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004189 pdxH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005900 pdxH CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001595 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001699 pdxH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006164 pdxH CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005241 pdxH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005072 pdxH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008935 pdxH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005981 pdxH CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004917 pdxH CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004959 pdxH CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004426 pdxH CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005046 pdxH CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005925 pdxH CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004864 pdxH CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001415 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001405 pdxH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001884 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006168 pdxH CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006816 pdxH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005632 pdxH CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004964 pdxH CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108417 pdxH CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083030 pdxH CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001748 pdxH CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094849 pdxH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007919 pdxH CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005623 pdxH CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008342 pdxH CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003570 pdxH CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266505 pdxH CDS
Person Approved Go view Shigella boydii 227 ADV-0001653 pdxH CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007239 pdxH CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007087 pdxH CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002149 pdxH CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072884 pdxH CDS
Person Approved Go view Shigella flexneri 301 ABT-0087973 pdxH CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001763 pdxH CDS
Person Approved Go view Shigella sonnei 046 ADD-0001645 pdxH CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003972 VCA1079 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000510 pdxH CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003367 pdxH CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000531 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006276 pdxH CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000927 pdxH CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000724 pdxH CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002039 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239451 pdxH CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006669 pdxH CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002073 pdxH CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004858 pdxH CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001091 pdxH CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123148 pdxH CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007000 pdxH CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006716 pdxH CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003038 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007895 pdxH CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006110 pdxH CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031667 pdxH CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008084 pdxH CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002201 pdxH CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000922 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007000 pdxH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005742 pdxH CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002368 pdxH CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002811 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002219 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014117 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003687 pdxH CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20401mutantTn5 InsertionRequest the StrainABE-0005482pdxHpdxH::Tn5KAN-2 at position 417 in Plus orientation ,- pKD460Blattner Laboratory
FB20402mutantTn5 InsertionRequest the StrainABE-0005482pdxHpdxH::Tn5KAN-2 at position 417 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1712351 to 1723007
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0285018protein_bindforward17126141712640Downstream
ABE-0285020tppB-35_signalforward17126381712643Downstream
ABE-0285019tppB-10_signalforward17126601712665Downstream
ABE-0285017tppB5'UTRforward17126711712768Downstream
ABE-0005469dtpACDSforward17127691714271Downstream
ABE-0005473gstACDSforward17143771714982Downstream
ABE-0005475pdxYCDScomplement17150261715889Downstream
ABE-0005477tyrSCDScomplement17159481717222Downstream
ABE-0005482pdxHCDScomplement17173511718007Matches
ABE-0005485mliCCDScomplement17180661718395Upstream
ABE-0005488anmKCDScomplement17184931719602Upstream
ABE-0005493slyBCDSforward17198761720343Upstream
ABE-0005495slyACDScomplement17203901720824Upstream
ABE-0005499ydhICDSforward17210251721261Upstream
ABE-0005501ydhJCDSforward17212641722121Upstream
ABE-0005503ydhKCDSforward17221211724133Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.