Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005505 (sodC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005505 showshow history
Names
sodC JW1638 ECK1642 b1646
Product
superoxide dismutase (Cu-Zn)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1724134 1724655 522 174
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000605
EnteroFam0005505: Trusted threshold=455.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001424 (IPR001424 Superoxide dismutase, copper/zinc binding domain) Apr 2008
Automated Process Approved IPR024134 (IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone) Jul 2018
Automated Process Approved IPR036423 (IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily) Jul 2018
Automated Process Approved PF00080 (PF00080 Copper/zinc superoxide dismutase (SODC)) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006801 superoxide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004785 (DEPRECATED) copper, zinc superoxide dismutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name sodC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1642 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1638 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1646 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product superoxide dismutase (Cu-Zn) Published Annotation - EcoCyc Accession Number: G6886
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Automated Process Approved alternate product name superoxide dismutase, Cu, Zn, periplasmic Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name superoxide dismutase precursor (Cu-Zn) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name superoxide dismutase, Cu, Zn Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005505: Trusted threshold=455.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000605
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR001424 Superoxide dismutase, copper/zinc binding domain Protein Sequence Similarity - InterPro Domain: IPR001424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone Protein Sequence Similarity - InterPro Domain: IPR024134
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00080 Copper/zinc superoxide dismutase (SODC) Protein Sequence Similarity - PFAM Model Name: PF00080
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036423
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.15.1.1 Published Annotation - Swiss-Prot Accession Number: P0AGD1 Feb 2006
Person Uncurated MultiFun 5.6.2 (cell processes; protection; detoxification (xenobiotic metabolism)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.2 (location of gene products; periplasmic space) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AGD1 Published Annotation - Swiss-Prot Accession Number: P0AGD1 Jan 2006
Automated Process Approved db xref GeneID:945343 Published Annotation - Entrez Gene Database ID: 945343
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787934 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGD1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005505 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13419 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Detoxification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note superoxide dismutase precursor (Cu-Zn); GO_component: GO:0042597 - periplasmic space; GO_process: GO:0006805 - xenobiotic metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74718.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Periplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006801 superoxide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0042597 periplasmic space Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004785 (DEPRECATED) copper, zinc superoxide dismutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000605 sodC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002451 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000099 sodC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000854 sodC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002301 sodC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000102 sodC CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002340 sodC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0000182 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002140 sodC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002780 sodC CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0017092 sodC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002042 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002405 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005677 sodC_1 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001604 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010215 sodC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001568 sodC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002741 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007695 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005483 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005991 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078153 sodC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001852 sodC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002131 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008843 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008760 sodC_1 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001848 sodC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006294 sodC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006136 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005737 sodC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010045 sodC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010432 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010453 sodC_1 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007198 sodC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008477 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010909 sodC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010600 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010718 sodC_1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009748 sodC_1 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026435 sodC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008607 sodC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006398 sodC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002048 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001547 sodC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001689 sodC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002428 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002004 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002263 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001844 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176002 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001798 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001551 sodC_1 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132336 sodC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004231 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001844 sodC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002612 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001991 sodC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004320 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001100 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003999 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001111 sodC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003023 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001802 sodC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002424 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009446 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002516 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289836 sodC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004943 sodC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062473 sodC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001349 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003865 CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006998 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001367 sodC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005908 sodC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001603 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001692 sodC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006172 sodC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005267 sodC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005096 sodC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0009036 sodC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005973 sodC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004909 sodC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004951 sodC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004418 sodC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005038 sodC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005917 sodC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004872 sodC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001423 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001413 sodC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001892 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006160 sodC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006824 sodC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005624 sodC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004956 sodC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108431 sodC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083022 sodC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001740 sodC_2 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094829 sodCII CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007927 sodC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005615 sodC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008334 sodC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003577 CDS
Person Approved Go view Shigella boydii 227 ADV-0001646 sodC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007247 sodC_1 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007095 sodC_1 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002158 sodC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072895 sodC CDS
Person Approved Go view Shigella flexneri 301 ABT-0255991 sodC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001775 sodC CDS
Person Approved Go view Shigella sonnei 046 ADD-0001637 sodC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001655 VC1583 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002969 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002335 sodC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000122 sodC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000475 sodC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000897 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234921 sodC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005084 sodC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003444 sodC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008161 sodC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003981 sodC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126680 sodC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006430 sodC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005918 sodC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002224 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005904 sodC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004257 sodC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030452 sodC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006659 sodC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0000877 sodC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003574 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004863 sodC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007330 sodC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0000798 sodC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000931 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0004087 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20405mutantTn5 InsertionRequest the StrainABE-0005505sodCsodC::Tn5KAN-2 at position 106 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1719134 to 1729655
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005488anmKCDScomplement17184931719602Downstream
ABE-0005493slyBCDSforward17198761720343Downstream
ABE-0005495slyACDScomplement17203901720824Downstream
ABE-0005499ydhICDSforward17210251721261Downstream
ABE-0005501ydhJCDSforward17212641722121Downstream
ABE-0005503ydhKCDSforward17221211724133Downstream
ABE-0005505sodCCDScomplement17241341724655Matches
ABE-0005508ydhFCDScomplement17247361725632Upstream
ABE-0005510ydhLCDScomplement17256811725920Upstream
ABE-0005514nemRCDSforward17260231726622Upstream
ABE-0005516nemACDSforward17266591727756Upstream
ABE-0005520gloACDSforward17278371728244Upstream
ABE-0005523rntCDSforward17283471728994Upstream
ABE-0005525lhrCDSforward17290871733703Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.