Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005520 (gloA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005520 showshow history
Names
gloA JW1643 ECK1647 b1651
Product
lactoylglutathione lyase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1727837 1728244 408 136
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000607
EnteroFam0005520: Trusted threshold=373.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004361 (IPR004361 Glyoxalase I) Apr 2008
Automated Process Approved IPR011588 (IPR011588 (DEPRECATED) Glyoxalase/extradiol ring-cleavage dioxygenase) Apr 2008
Automated Process Approved IPR004360 (IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain) Apr 2008
Automated Process Approved IPR029068 (IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase) Jul 2018
Automated Process Approved PF00903 (PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009438 methylglyoxal metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004361
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004361
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004462 lactoylglutathione lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004361
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name gloA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1647 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1643 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1651 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product lactoylglutathione lyase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name glyoxalase I, Ni-dependent Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005520: Trusted threshold=373.1; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000607
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004361 Glyoxalase I Protein Sequence Similarity - InterPro Domain: IPR004361
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011588 (DEPRECATED) Glyoxalase/extradiol ring-cleavage dioxygenase Protein Sequence Similarity - InterPro Domain: IPR011588
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Protein Sequence Similarity - PFAM Model Name: PF00903
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Protein Sequence Similarity - InterPro Domain: IPR029068
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Protein Sequence Similarity - InterPro Domain: IPR004360
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.4.1.5 Published Annotation - Swiss-Prot Accession Number: P0AC81 Feb 2006
Person Uncurated MultiFun 1.7.23 (metabolism; central intermediary metabolism; methylglyoxal metabolism) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946161 Published Annotation - Entrez Gene Database ID: 946161
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AC81 Published Annotation - Swiss-Prot Accession Number: P0AC81 Jan 2006
Automated Process Approved db xref GI:1787940 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AC81 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005520 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13421 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Central intermediary metabolism: Pool, multipurpose conversions Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note lactoylglutathione lyase; GO_process: GO:0009438 - methylglyoxal metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74723.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004361
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009438 methylglyoxal metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004361
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004462 lactoylglutathione lyase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004361
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000607 gloA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001133 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001008 gloA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001327 gloA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001488 gloA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000962 gloA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001386 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002130 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002346 gloA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002286 gloA CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002136 gloA CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002775 gloA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006444 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0047165 gloA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002412 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002399 gloA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301319 gloA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001859 gloA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001862 gloA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004197 gloA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005682 gloA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001609 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010220 gloA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001572 gloA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002736 gloA CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007690 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005488 gloA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005986 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078159 gloA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001857 gloA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002137 gloA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008848 gloA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008765 gloA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001853 gloA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006299 gloA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006141 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010050 gloA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010438 gloA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010448 gloA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007203 gloA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008482 gloA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010904 gloA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010928 gloA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010606 gloA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010863 gloA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010492 gloA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009753 gloA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026440 gloA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008602 gloA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006403 gloA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002053 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001552 gloA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001694 gloA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002423 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002009 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002258 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001850 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176008 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001803 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001546 gloA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132341 gloA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004226 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001849 gloA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002037 gloA CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002971 gloA CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001996 gloA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004314 gloA CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006370 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001095 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004004 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001107 gloA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003028 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001797 gloA CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002429 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009440 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002511 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289829 gloA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004938 gloA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062190 gloA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001100 gloA CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001698 gloA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002755 gloA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007343 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142815 gloA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005913 gloA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001610 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001687 gloA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006177 gloA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005282 gloA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005110 gloA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0009030 gloA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005968 gloA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004904 gloA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004946 gloA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004413 gloA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005033 gloA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005912 gloA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004877 gloA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001428 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001418 gloA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001897 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006155 gloA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006829 gloA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005619 gloA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004951 gloA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108441 gloA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083017 gloA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001735 gloA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094815 gloA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007932 gloA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005610 gloA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008329 gloA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003587 gloA CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265624 gloA CDS
Person Approved Go view Shigella boydii 227 ADV-0001641 gloA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007252 gloA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007565 gloA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002166 gloA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072900 gloA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087987 gloA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001780 gloA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001632 gloA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001078 VC1010 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003355 gloA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000542 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006307 gloA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000914 gloA1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000736 gloA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002051 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239470 gloA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006681 gloA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002087 gloA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004869 gloA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001080 gloA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123178 gloA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006989 gloA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006727 gloA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001577 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007884 gloA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006118 gloA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031659 gloA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008073 gloA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002212 gloA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000908 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006989 gloA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005730 gloA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002379 gloA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002819 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002205 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014162 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003673 gloA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1722837 to 1733244
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005503ydhKCDSforward17221211724133Upstream
ABE-0005505sodCCDScomplement17241341724655Upstream
ABE-0005508ydhFCDScomplement17247361725632Upstream
ABE-0005510ydhLCDScomplement17256811725920Upstream
ABE-0005514nemRCDSforward17260231726622Upstream
ABE-0005516nemACDSforward17266591727756Upstream
ABE-0005520gloACDSforward17278371728244Matches
ABE-0005523rntCDSforward17283471728994Downstream
ABE-0005525lhrCDSforward17290871733703Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.