Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005527 (grxD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005527 showshow history
Names
grxD JW1646 ECK1650 ydhD b1654
Product
monothiol glutaredoxin
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1733754 1734101 348 116
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000609
EnteroFam0005527: Trusted threshold=332.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR004480 (IPR004480 Monothiol glutaredoxin-related) Apr 2008
Automated Process Approved IPR012336 (IPR012336 Thioredoxin-like fold) Apr 2008
Automated Process Approved IPR002109 (IPR002109 Glutaredoxin) Apr 2008
Automated Process Approved IPR012335 (IPR012335 (DEPRECATED) Thioredoxin fold) Apr 2008
Automated Process Approved IPR014434 (IPR014434 Monothiol glutaredoxin) Apr 2008
Automated Process Approved IPR036249 (IPR036249 Thioredoxin-like superfamily) Jul 2018
Automated Process Approved PF00462 (PF00462 Glutaredoxin) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name grxD Published Sequence Analysis - PubMed ID: 15833738
Reference: Escherichia coli K-12 		Feb 2007
Person Approved synonym ECK1650 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1646 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ydhD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b1654 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product monothiol glutaredoxin Experimental - PubMed ID: 15833738
Reference: Escherichia coli K-12 		Feb 2007
Person Approved alternate product name Grx4 Published Sequence Analysis - PubMed ID: 15840565
Reference: Escherichia coli K-12 		Feb 2007
Automated Process Approved alternate product name glutaredoxin-4 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Person Approved EnteroFam EnteroFam0005527: Trusted threshold=332.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000609
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004480 Monothiol glutaredoxin-related Protein Sequence Similarity - InterPro Domain: IPR004480
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012336 Thioredoxin-like fold Protein Sequence Similarity - InterPro Domain: IPR012336
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012335 (DEPRECATED) Thioredoxin fold Protein Sequence Similarity - InterPro Domain: IPR012335
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00462 Glutaredoxin Protein Sequence Similarity - PFAM Model Name: PF00462
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014434 Monothiol glutaredoxin Protein Sequence Similarity - InterPro Domain: IPR014434
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036249 Thioredoxin-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036249
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002109 Glutaredoxin Protein Sequence Similarity - InterPro Domain: IPR002109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12181 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787943 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946169 Published Annotation - Entrez Gene Database ID: 946169
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AC69 Published Annotation - Swiss-Prot Accession Number: P0AC69 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AC69 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005527 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74726.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0045454 cell redox homeostasis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0015035 protein-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002109
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000609 grxD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001135 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000203 grxD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000283 grxD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001056 grxD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000747 grxD CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001383 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002132 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129457 ydhD CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104902 ydhD CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104297 ydhD CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002348 grxD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002288 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002133 grxD CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002773 grxD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006442 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0014666 grxD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002414 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002397 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301315 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001857 ydhD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001864 ydhD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004201 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005685 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001611 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010223 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001574 ydhO CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002733 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007687 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005491 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005983 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078163 grxD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001860 grxD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002142 ydhD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008851 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008769 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001855 grxD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006303 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006145 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005745 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010053 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010441 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010445 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007206 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008485 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010901 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010904 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010609 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010857 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010489 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010822 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026443 grxD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008600 grxD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006407 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002056 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001555 grxD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001697 grxD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002420 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002012 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002255 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001854 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176010 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001806 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001543 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132344 grxD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004222 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001852 ydhD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002039 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002973 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001998 ydhD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004312 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006368 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001092 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004007 CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003030 CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002431 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009438 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002509 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289827 grxD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004936 ydhD CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062188 grxD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001013 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0000497 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002753 grxD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007345 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142819 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004234 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005915 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001614 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001685 grxD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006179 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005288 ydhD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005116 ydhD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0009028 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005966 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004902 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004411 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005031 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005910 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004879 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001430 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001420 grxD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001899 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006153 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006831 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005616 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004948 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108447 grxD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083015 grxD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001733 ydhD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094812 grxD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007934 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005608 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008327 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003589 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266490 CDS
Person Approved Go view Shigella boydii 227 ADV-0001635 ydhD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007259 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007569 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002169 ydhD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072904 grxD CDS
Person Approved Go view Shigella flexneri 301 ABT-0255993 grxD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001785 ydhD CDS
Person Approved Go view Shigella sonnei 046 ADD-0001629 grxD CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0001495 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002121 VC2044 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135840 ydhD CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000507 grxD CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003349 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000544 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006312 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000912 grxD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000738 grxD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002053 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239472 grxD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006683 grxD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002089 grxD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004871 grxD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001078 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123183 grxD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006987 grxD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006729 grxD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001629 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007882 grxD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006120 grxD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031655 grxD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008071 grxD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002214 grxD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000906 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006987 grxD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005728 grxD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002381 grxD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002821 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002201 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014176 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003671 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20407mutantTn5 InsertionRequest the StrainABE-0005527grxDydhD::Tn5KAN-I-SceI at position 227 in Plus orientation ,+ pKD460Blattner Laboratory
FB20408mutantTn5 InsertionRequest the StrainABE-0005527grxDydhD::Tn5KAN-I-SceI at position 227 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1728754 to 1739101
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005523rntCDSforward17283471728994Downstream
ABE-0005525lhrCDSforward17290871733703Downstream
ABE-0285462repeat_regionforward17337141733737Downstream
ABE-0005527grxDCDScomplement17337541734101Matches
ABE-0005533mepHCDSforward17344351735250Upstream
ABE-0005537sodBCDSforward17353781735959Upstream
ABE-0285463repeat_regionforward17359831736056Upstream
ABE-0005540ydhPCDScomplement17361211737290Upstream
ABE-0285185cydHCDScomplement17374561737545Upstream
ABE-0005545purRCDSforward17378441738869Upstream
ABE-0005547punRCDScomplement17388661739798Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.