Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005537 (sodB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005537 showshow history
Names
sodB JW1648 ECK1652 b1656
Product
superoxide dismutase (Fe)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1735378 1735959 582 194
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001189 (IPR001189 Manganese/iron superoxide dismutase) Apr 2008
Automated Process Approved IPR019831 (IPR019831 Manganese/iron superoxide dismutase, N-terminal) Jul 2018
Automated Process Approved IPR019832 (IPR019832 Manganese/iron superoxide dismutase, C-terminal) Jul 2018
Automated Process Approved IPR036314 (IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily) Jul 2018
Automated Process Approved IPR036324 (IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily) Jul 2018
Automated Process Approved PF00081 (PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain) Jul 2018
Automated Process Approved PF02777 (PF02777 Iron/manganese superoxide dismutases, C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR019831, IPR019832
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006801 superoxide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004784 superoxide dismutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sodB Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1652 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1648 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1656 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product superoxide dismutase (Fe) Published Annotation - EcoCyc Accession Number: EG10954
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name superoxide dismutase, iron Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved alternate product name superoxide dismutase, Fe Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR001189 Manganese/iron superoxide dismutase Protein Sequence Similarity - InterPro Domain: IPR001189
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036314
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036324
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR019832 Manganese/iron superoxide dismutase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR019832
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02777 Iron/manganese superoxide dismutases, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02777
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Protein Sequence Similarity - PFAM Model Name: PF00081
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR019831 Manganese/iron superoxide dismutase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR019831
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.15.1.1 Published Annotation - Swiss-Prot Accession Number: P0AGD3 Feb 2006
Person Uncurated MultiFun 5.6.2 (cell processes; protection; detoxification (xenobiotic metabolism)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:944953 Published Annotation - Entrez Gene Database ID: 944953
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787946 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AGD3 Published Annotation - Swiss-Prot Accession Number: P0AGD3 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AGD3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005537 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10954 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Detoxification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated genetic interaction sodA::cat plus sodB::kan; double null mutant is sensitive to the superoxide-generating agent plumbagin Experimental - PubMed ID: 16269676
Reference: Escherichia coli K-12 MG1655 		Nov 2005
Automated Process Approved note superoxide dismutase, iron; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006805 - xenobiotic metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74728.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006801 superoxide metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR019831, IPR019832
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004784 superoxide dismutase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001189
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005400 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002221 sodB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002366 sodB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003603 sodB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002423 sodB CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002352 sodB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002291 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002131 sodB CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002771 sodB CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002395 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004203 sodB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0005688 sodB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001613 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010226 sodB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001575 sodB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002731 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007684 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005493 sodB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005981 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078165 sodB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001863 sodB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002144 sodB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0008854 sodB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008771 sodB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001857 sodB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006306 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005747 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010055 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010444 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010443 sodB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007208 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008487 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010899 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010906 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010611 sodB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010820 sodB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026445 sodB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008598 sodB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006410 sodB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002058 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001557 sodB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001699 sodB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002418 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002014 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002253 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001856 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176012 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001809 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001541 sodB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132346 sodB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004219 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001854 sodB CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002976 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002000 sodB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004310 CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0004437 sodB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005917 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001617 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001683 sodB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006181 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005294 sodB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005121 sodB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0009026 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005964 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004900 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004940 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004409 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005029 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005908 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004881 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001432 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001422 sodB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001902 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006151 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006833 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005614 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004946 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108450 sodB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083013 sodB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001731 sodB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094807 sodB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007936 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005606 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008325 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003591 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266491 sodB CDS
Person Approved Go view Shigella boydii 227 ADV-0001630 sodB CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007262 sodB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007571 sodB CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002171 sodB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072906 sodB CDS
Person Approved Go view Shigella flexneri 301 ABT-0087991 sodB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001787 sodB CDS
Person Approved Go view Shigella sonnei 046 ADD-0001627 sodB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002122 VC2045 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003346 sodB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000546 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006317 sodB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000910 sodB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000740 sodB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002055 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239476 sodB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006685 sodB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002092 sodB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004873 sodB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001075 sodB CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123189 sodB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006985 sodB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006731 sodB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001631 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007880 sodB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006122 sodB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031653 sodB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008069 sodB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002217 sodB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000903 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006985 sodB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005726 sodB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002383 sodB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002825 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002197 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014191 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003667 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20409mutantTn5 InsertionRequest the StrainABE-0005537sodBsodB::Tn5KAN-I-SceI at position 343 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1730378 to 1740959
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005525lhrCDSforward17290871733703Upstream
ABE-0285462repeat_regionforward17337141733737Upstream
ABE-0005527grxDCDScomplement17337541734101Upstream
ABE-0005533mepHCDSforward17344351735250Upstream
ABE-0005537sodBCDSforward17353781735959Matches
ABE-0285463repeat_regionforward17359831736056Downstream
ABE-0005540ydhPCDScomplement17361211737290Downstream
ABE-0285185cydHCDScomplement17374561737545Downstream
ABE-0005545purRCDSforward17378441738869Downstream
ABE-0005547punRCDScomplement17388661739798Downstream
ABE-0005551punCCDSforward17399111741122Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.