Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005555 (cfa) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005555 showshow history
Names
cfa JW1653 ECK1657 cdfA b1661
Product
cyclopropane fatty acyl phospholipid synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1741413 1742561 1149 383
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000612
EnteroFam0005555: Trusted threshold=1015.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043).
Jan 2006
Automated Process Approved IPR003333 (IPR003333 Mycolic acid cyclopropane synthase) Apr 2008
Automated Process Approved IPR029063 (IPR029063 S-adenosyl-L-methionine-dependent methyltransferase) Jul 2018
Automated Process Approved PF02353 (PF02353 Mycolic acid cyclopropane synthetase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008610 lipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003333
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0008825 cyclopropane-fatty-acyl-phospholipid synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003333
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cfa Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved synonym cdfA Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym JW1653 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1657 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1661 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product cyclopropane fatty acyl phospholipid synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Oct 2021
Person Uncurated alternate product name cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name cyclopropane fatty acyl phospholipid synthase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005555: Trusted threshold=1015.8; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000612
Reference: EnteroFams
Jan 2006
Automated Process Approved protein family IPR003333 Mycolic acid cyclopropane synthase Protein Sequence Similarity - InterPro Domain: IPR003333
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family PF02353 Mycolic acid cyclopropane synthetase Protein Sequence Similarity - PFAM Model Name: PF02353
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Protein Sequence Similarity - InterPro Domain: IPR029063
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Approved EC number 2.1.1.79 Published Annotation - Swiss-Prot Accession Number: P0A9H7 Feb 2006
Person Uncurated MultiFun 1.5.4 (metabolism; building block biosynthesis; fatty acid and phosphatidic acid) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:944811 Published Annotation - Entrez Gene Database ID: 944811
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref ASAP:ABE-0005555 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9H7 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P0A9H7 Published Annotation - Swiss-Prot Accession Number: P0A9H7 Jan 2006
Automated Process Approved db xref GI:1787951 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG11531 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved function enzyme; Fatty acid and phosphatidic acid biosynthesis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note cyclopropane fatty acyl phospholipid synthase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC74733.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved regulation expression regulated by acetate; expression is induced by acetate Experimental - PubMed ID: 11244055
Reference: Escherichia coli ATCC43888 (EHEC)
Nov 2005
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008610 lipid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003333
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0008825 cyclopropane-fatty-acyl-phospholipid synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003333
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001138 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001296 cfa CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000278 cfa CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000038 cfa CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000183 cfa CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001378 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002136 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002356 cfa CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002295 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002125 cfa CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002765 cfa_1 CDS
Automated Process Approved Go view Dickeya chrysanthemi Ech1591 AFK-0006437 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020713 cfa CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002418 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002389 CDS
Automated Process Approved Go view Erwinia amylovora ATCC 49946 ACW-0301294 cfa CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001851 cfa CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001869 cfa CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004209 cfa CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009491 cfa CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001620 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010232 cfa CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001580 cfa CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002725 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007678 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005499 cfa CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005975 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078171 cfa CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001870 cfa CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002150 cfa CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010394 cfa CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008777 cfa CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001863 cfa CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006312 cfa CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002683 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005755 cfa CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010061 cfa CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010450 cfa CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010461 cfa CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007214 cfa CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010893 cfa CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011032 cfa CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026450 cfa CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008592 cfa CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006416 cfa CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002064 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001561 cfa CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001704 cfa CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002411 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002021 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002246 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001861 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176019 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001814 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001535 cfa CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132351 cfa CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004213 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001859 cfa CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002045 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002982 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002005 cfa CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004305 CDS
Automated Process Approved Go view Musicola paradisiaca Ech703 AGA-0006363 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001086 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0004013 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0001099 cfa CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0003036 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0001789 cfa CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002436 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0009433 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0002504 CDS
Person Uncurated Go view Pantoea stewartii DC283 ACV-0291560 cfa pseudogene
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0004930 cfa CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062185 cfa CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001118 cfa CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0002818 cfa CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001076 cfa CDS
Automated Process Approved Go view Pectobacterium sp. PC1 AFL-0007349 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142828 cfa CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005921 cfa CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001622 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001679 cfa CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006185 cfa CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005312 cfa CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005138 cfa CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008126 cfa CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005923 cfa CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004896 cfa CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004936 cfa CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004405 cfa CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005025 cfa CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005904 cfa CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004885 cfa CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001436 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001426 cfa CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001909 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006147 cfa CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006837 cfa CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005610 cfa CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004942 cfa CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108461 cfa CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083009 cfa CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001726 cfa CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094791 cfa CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007940 cfa CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008321 cfa CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003596 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267007 cfa CDS
Person Approved Go view Shigella boydii 227 ADV-0001625 cfa CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007268 cfa CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007577 cfa CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002176 cfa CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072911 cfa CDS
Person Approved Go view Shigella flexneri 301 ABT-0087996 cfa CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001792 cfa CDS
Person Approved Go view Shigella sonnei 046 ADD-0001622 cfa CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001190 VC1122 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003337 cfa CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000550 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006338 cdfA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000906 cdfA_4 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000745 cfa pseudogene
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002059 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239492 cfa CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006689 cfa CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002097 cfa CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004877 cfa CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001071 cfa CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123216 cfa CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006981 cfa CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006735 cfa CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001635 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007876 cfa CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006126 cfa CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031649 cfa CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008065 cfa CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002222 cfa CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000898 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006981 cfa CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005722 cfa CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002387 cfa CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002830 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002191 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014217 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003662 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20416mutantTn5 InsertionRequest the StrainABE-0005555cfacfa::Tn5KAN-2 at position 635 in Minus orientation ,- pKD460Blattner Laboratory
FB20417mutantTn5 InsertionRequest the StrainABE-0005555cfacfa::Tn5KAN-2 at position 635 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1736413 to 1747561
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005540ydhPCDScomplement17361211737290Upstream
ABE-0285185cydHCDScomplement17374561737545Upstream
ABE-0005545purRCDSforward17378441738869Upstream
ABE-0005547punRCDScomplement17388661739798Upstream
ABE-0005551punCCDSforward17399111741122Upstream
ABE-0005555cfaCDSforward17414131742561Matches
ABE-0005557ribCCDScomplement17426011743242Downstream
ABE-0005561mdtKCDSforward17434571744830Downstream
ABE-0005563ydhQCDScomplement17448711746127Downstream
ABE-0285731matS19protein_bindforward17451511745163Downstream
ABE-0005567valVtRNAforward17464351746511Downstream
ABE-0005569valWtRNAforward17465161746592Downstream
ABE-0005572ydhRCDSforward17467001747005Downstream
ABE-0005575ydhSCDSforward17471311748735Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.