Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005557 (ribC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005557 showshow history
Names
ribC JW1654 ECK1658 ribE b1662
Product
riboflavin synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1742601 1743242 642 214
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000613
EnteroFam0005557: Trusted threshold=558.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001783 (IPR001783 Lumazine-binding protein) Apr 2008
Automated Process Approved IPR026017 (IPR026017 Lumazine-binding domain) Jul 2018
Automated Process Approved IPR017938 (IPR017938 Riboflavin synthase-like beta-barrel) Jul 2018
Automated Process Approved PF00677 (PF00677 Lumazine binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ribC Experimental - PubMed ID: 9022701
Reference: Escherichia coli 		Aug 2002
Person Approved synonym ECK1658 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1654 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ribE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b1662 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product riboflavin synthase Published Annotation - EcoCyc Accession Number: EG11406
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Approved alternate product name riboflavin synthase, alpha subunit Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name riboflavin synthase, alpha chain Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005557: Trusted threshold=558.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000613
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00677 Lumazine binding domain Protein Sequence Similarity - PFAM Model Name: PF00677
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017938 Riboflavin synthase-like beta-barrel Protein Sequence Similarity - InterPro Domain: IPR017938
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR026017 Lumazine-binding domain Protein Sequence Similarity - InterPro Domain: IPR026017
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001783 Lumazine-binding protein Protein Sequence Similarity - InterPro Domain: IPR001783
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.5.1.9 Published Annotation - Swiss-Prot Accession Number: P0AFU8 Feb 2006
Person Uncurated MultiFun 1.5.3.9 (metabolism; building block biosynthesis; cofactor, small molecule carrier; riboflavin (Vitamin B2), FAD, FMN) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0AFU8 Published Annotation - Swiss-Prot Accession Number: P0AFU8 Jan 2006
Automated Process Approved db xref EcoGene:EG11406 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005557 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AFU8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787952 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945848 Published Annotation - Entrez Gene Database ID: 945848
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved function enzyme; Biosynthesis of cofactors, carriers: Riboflavin Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note riboflavin synthase, alpha chain Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74734.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000613 ribC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001139 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000367 ribC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000404 ribC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000834 ribC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000299 ribC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001377 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002137 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129382 ribE CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104833 ribE CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104219 ribE CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0002360 ribE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002297 ribE CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002124 ribE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002764 ribE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006436 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020714 ribC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002419 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002388 ribE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301289 ribE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001850 ribE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001870 ribE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004210 ribE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009490 ribE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001621 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010233 ribE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001581 ribE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002724 ribE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007677 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0005500 ribE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005974 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078172 ribC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001871 ribE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002151 ribE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010393 ribE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008778 ribE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001864 ribC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006313 ribE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002685 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005756 ribE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010062 ribE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010451 ribE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010462 ribE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007215 ribE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0011031 ribE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010607 ribE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026451 ribC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008591 ribC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006417 ribE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002065 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001562 ribC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001705 ribC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002410 ribE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002022 ribE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002245 ribE CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001862 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176020 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001815 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001534 ribE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132352 ribC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004212 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001860 ribC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002046 ribE CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002764 ribE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002006 ribC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004304 ribE CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006362 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001085 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004014 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001097 ribE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003037 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001787 ribE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002437 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009432 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002503 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289816 ribC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004929 ribE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062184 ribC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000998 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001695 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001075 ribC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007350 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142834 ribE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0000704 ribE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005922 ribE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001623 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001678 ribC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006186 ribE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005314 ribE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005140 ribE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008127 ribE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005922 ribE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004895 ribE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004935 ribE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0004404 ribE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0005024 ribE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005903 ribE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004886 ribE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001437 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001427 ribC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001910 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006146 ribE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006838 ribE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005609 ribE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0004941 ribE CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108462 ribC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0083008 ribC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001725 ribE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094789 ribC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007941 ribE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008456 ribE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008320 ribE CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000044 ribE pseudogene
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265879 ribE-1 CDS
Person Approved Go view Shigella boydii 227 ADV-0001624 ribE CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007269 ribE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007578 ribE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002177 ribE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072912 ribC CDS
Person Approved Go view Shigella flexneri 301 ABT-0087997 ribE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001793 ribE CDS
Person Approved Go view Shigella sonnei 046 ADD-0001621 ribC CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000506 ribC CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003334 ribC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000551 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006340 ribC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000905 ribE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000746 ribC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002060 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239493 ribC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006691 ribE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002098 ribC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004878 ribE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001070 ribE CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123218 ribC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006980 ribE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006736 ribE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001636 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007875 ribE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006127 ribE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031648 ribC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008064 ribE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002223 ribC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000897 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006980 ribE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005721 ribE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002388 ribC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002831 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002190 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014222 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003661 ribE CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1737601 to 1748242
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005545purRCDSforward17378441738869Downstream
ABE-0005547punRCDScomplement17388661739798Downstream
ABE-0005551punCCDSforward17399111741122Downstream
ABE-0005555cfaCDSforward17414131742561Downstream
ABE-0005557ribCCDScomplement17426011743242Matches
ABE-0005561mdtKCDSforward17434571744830Upstream
ABE-0005563ydhQCDScomplement17448711746127Upstream
ABE-0285731matS19protein_bindforward17451511745163Upstream
ABE-0005567valVtRNAforward17464351746511Upstream
ABE-0005569valWtRNAforward17465161746592Upstream
ABE-0005572ydhRCDSforward17467001747005Upstream
ABE-0005575ydhSCDSforward17471311748735Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.