Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005600 (pykF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005600 showshow history
Names
pykF JW1666 ECK1672 b1676
Product
pyruvate kinase I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1755698 1757110 1413 471
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000615
EnteroFam0005600: Trusted threshold=1320.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR001697 (IPR001697 Pyruvate kinase) Apr 2008
Automated Process Approved IPR015793 (IPR015793 Pyruvate kinase, barrel) Apr 2008
Automated Process Approved IPR015795 (IPR015795 Pyruvate kinase, C-terminal) Apr 2008
Automated Process Approved IPR011037 (IPR011037 Pyruvate kinase-like, insert domain superfamily) Apr 2008
Automated Process Approved IPR015794 (IPR015794 (DEPRECATED) Pyruvate kinase, alpha/beta) Apr 2008
Automated Process Approved IPR036918 (IPR036918 Pyruvate kinase, C-terminal domain superfamily) Jul 2018
Automated Process Approved IPR015813 (IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily) Jul 2018
Automated Process Approved PF02887 (PF02887 Pyruvate kinase, alpha/beta domain) Jul 2018
Automated Process Approved PF00224 (PF00224 Pyruvate kinase, barrel domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Approved GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030955 potassium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004743 pyruvate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pykF Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1666 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1672 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1676 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product pyruvate kinase I Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name pyruvate kinase I (formerly F), fructose stimulated Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name pyruvate kinase I (formerly F), fructose-stimulated Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005600: Trusted threshold=1320.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000615
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR015793 Pyruvate kinase, barrel Protein Sequence Similarity - InterPro Domain: IPR015793
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001697 Pyruvate kinase Protein Sequence Similarity - InterPro Domain: IPR001697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR036918 Pyruvate kinase, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036918
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR011037 Pyruvate kinase-like, insert domain superfamily Protein Sequence Similarity - InterPro Domain: IPR011037
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015794 (DEPRECATED) Pyruvate kinase, alpha/beta Protein Sequence Similarity - InterPro Domain: IPR015794
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00224 Pyruvate kinase, barrel domain Protein Sequence Similarity - PFAM Model Name: PF00224
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015795 Pyruvate kinase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015795
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02887 Pyruvate kinase, alpha/beta domain Protein Sequence Similarity - PFAM Model Name: PF02887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.7.1.40 Published Annotation - Swiss-Prot Accession Number: P0AD61 Feb 2006
Person Uncurated MultiFun 1.3.5 (metabolism; energy metabolism, carbon; fermentation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.7 (metabolism; energy metabolism, carbon; anaerobic respiration) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.3.1 (metabolism; energy metabolism, carbon; glycolysis) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787965 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946179 Published Annotation - Entrez Gene Database ID: 946179
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0AD61 Published Annotation - Swiss-Prot Accession Number: P0AD61 Jan 2006
Automated Process Approved db xref ASAP:ABE-0005600 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0AD61 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10804 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Energy metabolism, carbon: Glycolysis Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note pyruvate kinase I (formerly F), fructose stimulated; GO_process: GO:0006096 - glycolysis; GO_process: GO:0006113 - fermentation; GO_process: GO:0009061 - anaerobic respiration Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74746.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009061 anaerobic respiration Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Approved GO biological process GO:0006096 glycolytic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO biological process GO:0006113 fermentation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006096 glycolytic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030955 potassium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015813
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004743 pyruvate kinase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001697
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000615 pykF CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000410 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001790 pykF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001331 pykF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000313 pykF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000893 pykF CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001340 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003024 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001803 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002302 pykF CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002095 pykF CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002695 pykF CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006421 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0047171 pykF CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002431 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002371 pykF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301278 pykF CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001848 pykF CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001876 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004225 pykF CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009476 pykF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001635 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010247 pyk CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001593 pykF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002712 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007661 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010753 pykF CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078189 pykF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001886 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002166 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001878 pykF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006329 pykF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010077 pykF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010466 pykF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010477 pykF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007230 pykF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010597 pykF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010877 pykF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026465 pykF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0008575 pykF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006432 pykF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002077 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001574 pykF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001719 pykF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002398 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002034 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002233 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001879 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001830 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001519 pykF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132366 pykF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004196 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001875 pykF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002049 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002762 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002139 pykF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004274 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006340 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001083 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004016 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001092 pykF CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003039 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001782 pykF CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002442 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009430 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002501 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289814 pykF CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004924 pykF CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062126 pykF CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001116 pykF CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002806 pykF CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003952 pykF CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007421 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142842 pykF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005967 pykF CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001672 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001628 pykF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006233 pykF CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005442 pykF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005262 pykF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008173 pykF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005875 pykF CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004848 pykF CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004889 pykF CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007863 pykF CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004978 pykF CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005858 pykF CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004931 pykF CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001485 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001475 pykF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001963 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006101 pykF CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006883 pykF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005563 pykF CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008426 pykF CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108549 pykF CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082960 pykF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001674 pykF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094662 pykF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007988 pykF CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008410 pykF CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003602 CDS
Person Approved Go view Shigella boydii 227 ADV-0001608 pykF CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007286 pykF CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002198 pykF CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072929 pykF CDS
Person Approved Go view Shigella flexneri 301 ABT-0088011 pykF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001809 pykF CDS
Person Approved Go view Shigella sonnei 046 ADD-0001607 pykF CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0000533 VC0485 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003324 pykF CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000553 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006353 pykF CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000903 pykF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000749 pykF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001474 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239510 pykF CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006696 pykF CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002103 pykF CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004883 pykF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001068 pykF CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123240 pykF CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006975 pykF CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006741 pykF CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007870 pykF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006132 pykF CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031644 pykF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008059 pykF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002228 pykF CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000892 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006975 pykF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005716 pykF CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002393 pykF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002837 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002184 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014355 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003628 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20420mutantTn5 InsertionRequest the StrainABE-0005600pykFpykF::Tn5KAN-2 at position 400 in Plus orientation ,- pKD460Blattner Laboratory
FB20421mutantTn5 InsertionRequest the StrainABE-0005600pykFpykF::Tn5KAN-2 at position 400 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1750698 to 1762110
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005583ydhXCDScomplement17503451751013Upstream
ABE-0005585ydhWCDScomplement17510771751724Upstream
ABE-0005587ydhVCDScomplement17517281753830Upstream
ABE-0005589ydhYCDScomplement17538511754477Upstream
ABE-0005591fumDCDScomplement17549321755141Upstream
ABE-0285853ynhHCDSforward17554961755690Upstream
ABE-0005600pykFCDSforward17556981757110Matches
ABE-0005603lppCDSforward17574211757657Downstream
ABE-0005605ldtECDScomplement17577211758725Downstream
ABE-0005608sufECDScomplement17588741759290Downstream
ABE-0005610sufSCDScomplement17593031760523Downstream
ABE-0005617sufDCDScomplement17605201761791Downstream
ABE-0005619sufCCDScomplement17617661762512Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.