Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005608 (sufE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005608 showshow history
Names
sufE JW1669 ECK1675 ynhA b1679
Product
sulfur acceptor protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1758874 1759290 417 139
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000617
EnteroFam0005608: Trusted threshold=336.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003808 (IPR003808 Fe-S metabolism associated domain, SufE-like) Apr 2008
Automated Process Approved PF02657 (PF02657 Fe-S metabolism associated domain) Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name sufE Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1669 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ynhA Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1675 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1679 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product sulfur acceptor protein Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name conserved hypothetical protein Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005608: Trusted threshold=336.4; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000617
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR003808 Fe-S metabolism associated domain, SufE-like Protein Sequence Similarity - InterPro Domain: IPR003808
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02657 Fe-S metabolism associated domain Protein Sequence Similarity - PFAM Model Name: PF02657
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76194 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787969 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946173 Published Annotation - Entrez Gene Database ID: 946173
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P76194 Published Annotation - Swiss-Prot Accession Number: P76194 Jan 2005
Automated Process Approved db xref ASAP:ABE-0005608 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13961 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74749.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000617 sufE CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002109 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001621 sufE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001611 sufE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000764 sufE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001816 sufE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001337 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003021 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001800 sufE CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002305 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002092 sufE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002692 sufE CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006416 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020085 sufE CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002368 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301271 sufE CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001846 sufE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001878 sufE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004228 sufE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007724 sufE CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001638 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010250 sufE CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001596 sufE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002709 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007656 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009257 sufE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008183 SufE CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078192 sufE CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001889 sufE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002169 sufE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007417 sufE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009069 sufE CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001881 sufE CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006332 sufE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006188 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005776 sufE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010080 sufE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008640 sufE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010023 sufE CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007233 sufE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007665 sufE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010874 sufE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009869 sufE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007836 sufE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007852 sufE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010074 sufE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026468 sufE CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006787 sufE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006435 sufE CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002080 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001577 sufE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001722 sufE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002395 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002037 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002230 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001882 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176039 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001833 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001516 sufE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132369 sufE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004193 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001878 sufE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002053 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002142 sufE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004271 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001080 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004019 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001089 sufE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003042 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001779 sufE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002445 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009427 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002497 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289810 sufE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004921 sufE CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062123 sufE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001024 sufE CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001679 sufE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002422 sufE CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007427 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142855 sufE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005971 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001675 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001623 sufE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006237 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005459 ynhA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005278 ynhA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008178 sufE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005870 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004844 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004884 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007858 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004973 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005854 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004935 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001490 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001480 sufE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001967 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006097 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006887 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005559 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008422 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108558 sufE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082956 sufE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001670 ynhA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094653 sufE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007993 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008406 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008456 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003604 CDS
Person Approved Go view Shigella boydii 227 ADV-0001605 ynhA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007289 sufE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007695 sufE CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002204 ynhA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072932 sufE CDS
Person Approved Go view Shigella flexneri 301 ABT-0088014 sufE CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001812 ynhA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001604 sufE CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000530 sufE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000556 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006364 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000897 sufE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000752 sufE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001477 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239519 sufE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006703 sufE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002111 sufE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004889 sufE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001063 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123259 sufE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008326 sufE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007756 sufE CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008872 sufE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006139 sufE CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031636 sufE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008053 sufE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002236 sufE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000886 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006970 sufE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005713 sufE CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002396 sufE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002842 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002179 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014368 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003624 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21935mutantTn5 InsertionRequest the StrainABE-0005608sufEynhA::Tn5KAN-2 at position 80 in Minus orientation ,+ pKD460Blattner Laboratory
FB22922mutantTn5 InsertionRequest the StrainABE-0005608sufEynhA::Tn5(KAN-2) at position 80 in Minus orientation ,+ pKD46 0Blattner Laboratory
FB23473mutantTn5 InsertionRequest the StrainABE-0005608sufEynhA::Tn5KAN-2 at position 80 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1753874 to 1764290
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005589ydhYCDScomplement17538511754477Downstream
ABE-0005591fumDCDScomplement17549321755141Downstream
ABE-0285853ynhHCDSforward17554961755690Downstream
ABE-0005600pykFCDSforward17556981757110Downstream
ABE-0005603lppCDSforward17574211757657Downstream
ABE-0005605ldtECDScomplement17577211758725Downstream
ABE-0005608sufECDScomplement17588741759290Matches
ABE-0005610sufSCDScomplement17593031760523Upstream
ABE-0005617sufDCDScomplement17605201761791Upstream
ABE-0005619sufCCDScomplement17617661762512Upstream
ABE-0005621sufBCDScomplement17625221764009Upstream
ABE-0005624sufACDScomplement17640181764386Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.