Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005610 (sufS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005610 showshow history
Names
sufS JW1670 ECK1676 ynhB csdB b1680
Product
L-cysteine desulfurase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1759303 1760523 1221 407
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000192 (IPR000192 Aminotransferase class V domain) Apr 2008
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR010970 (IPR010970 Cysteine desulfurase, SufS) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved PF00266 (PF00266 Aminotransferase class-V) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006534 cysteine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010970
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0031071 cysteine desulfurase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010970
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010970
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sufS Experimental - PubMed ID: 10322040
Reference: Escherichia coli 		Aug 2002
Person Approved synonym csdB Experimental - PubMed ID: 10329673
Reference: Escherichia coli 		Nov 2003
Person Approved synonym JW1670 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ynhB Published Sequence Analysis - PubMed ID: 9729612 Nov 2003
Person Approved synonym ECK1676 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1680 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product L-cysteine desulfurase Published Annotation - EcoCyc Accession Number: G6906
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Automated Process Approved alternate product name cysteine desulfurase, stimulated by SufE; selenocysteine lyase, PLP-dependent Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name selenocysteine lyase, PLP-dependent Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name selenocysteine lyase; involved in formation of FhuF [2Fe-2S] cluster Experimental - PubMed ID: 10322040
Reference: Escherichia coli 		Jan 2006
Protein Family
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR000192 Aminotransferase class V domain Protein Sequence Similarity - InterPro Domain: IPR000192
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010970 Cysteine desulfurase, SufS Protein Sequence Similarity - InterPro Domain: IPR010970
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00266 Aminotransferase class-V Protein Sequence Similarity - PFAM Model Name: PF00266
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 2.8.1.7 Published Annotation - Swiss-Prot Accession Number: P77444 Feb 2006
Person Approved EC number 4.4.1.16 Published Annotation - Swiss-Prot Accession Number: P77444 Feb 2006
Person Approved MultiFun 1.7.19 (metabolism; central intermediary metabolism; incorporation of metal ions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005610 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13962 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946185 Published Annotation - Entrez Gene Database ID: 946185
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P77444 Published Annotation - Swiss-Prot Accession Number: P77444 Jan 2006
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77444 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787970 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function 1.7.19 metabolism; central intermediary metabolism; incorporation of metal ions Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74750.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006534 cysteine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010970
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000192
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0031071 cysteine desulfurase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010970
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010970
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002108 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001786 sufS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001266 sufS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000763 sufS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001912 sufS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001336 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003020 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001799 sufS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002306 sufS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002091 sufS CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002691 sufS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006415 CDS
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020086 sufS CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002367 sufS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301267 sufS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001845 sufS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001879 sufS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004229 sufS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007725 sufS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001639 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010251 sufS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001597 sufS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002708 sufS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007655 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009256 sufS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008182 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078193 sufS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001890 sufS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002170 sufS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007416 sufS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009070 sufS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001882 sufS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006333 sufS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006189 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005777 sufS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010081 sufS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008641 sufS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010022 sufS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007234 sufS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007664 sufS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010873 sufS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008618 sufS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009870 sufS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007835 sufS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007851 sufS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010075 sufS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026469 sufS CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006786 sufS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006436 sufS CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001578 sufS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001723 sufS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002394 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002038 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002229 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001883 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176040 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001834 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001515 sufS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132370 sufS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004192 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001879 sufS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002054 sufS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002143 sufS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004270 sufS CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001079 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004020 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001088 sufS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003043 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001778 sufS CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002446 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009426 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002496 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289809 sufS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004920 sufS CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062122 sufS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001023 sufS CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001678 sufS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002421 sufS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007428 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142857 sufS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005972 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001676 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001622 sufS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006238 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005461 sufS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005280 sufS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008179 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005869 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004843 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007857 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004972 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005853 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004936 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001968 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006096 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006888 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005558 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008421 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108559 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082955 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001669 sufS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094650 sufS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007994 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008405 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008455 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003605 sufS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267431 CDS
Person Approved Go view Shigella boydii 227 ADV-0001604 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007290 sufS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007694 sufS CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0002205 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072933 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001813 CDS
Person Approved Go view Shigella sonnei 046 ADD-0001603 sufS CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000531 sufS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000557 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006366 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000896 sufS_2 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000753 sufS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001478 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239520 sufS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006704 sufS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002112 sufS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004890 sufS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001062 sufS CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123260 sufS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008325 sufS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007757 sufS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002013 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008873 sufS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006140 sufS CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031635 sufS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008052 sufS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002237 sufS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000885 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006969 sufS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005712 sufS CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002397 sufS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002843 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002178 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014370 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003623 sufS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21936mutantTn5 InsertionRequest the StrainABE-0005610sufSb1680::Tn5KAN-2 at position 842 in Plus orientation ,+ pKD460Blattner Laboratory
FB22923mutantTn5 InsertionRequest the StrainABE-0005610sufSb1680::Tn5(KAN-2) at position 842 in Plus orientation ,+ pKD46 0Blattner Laboratory
FB23474mutantTn5 InsertionRequest the StrainABE-0005610sufSb1680::Tn5KAN-2 at position 842 in Plus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1754303 to 1765523
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005589ydhYCDScomplement17538511754477Downstream
ABE-0005591fumDCDScomplement17549321755141Downstream
ABE-0285853ynhHCDSforward17554961755690Downstream
ABE-0005600pykFCDSforward17556981757110Downstream
ABE-0005603lppCDSforward17574211757657Downstream
ABE-0005605ldtECDScomplement17577211758725Downstream
ABE-0005608sufECDScomplement17588741759290Downstream
ABE-0005610sufSCDScomplement17593031760523Matches
ABE-0005617sufDCDScomplement17605201761791Overlaps Upstream
ABE-0005619sufCCDScomplement17617661762512Upstream
ABE-0005621sufBCDScomplement17625221764009Upstream
ABE-0005624sufACDScomplement17640181764386Upstream
ABE-0047250rydBncRNAcomplement17647131764780Upstream
ABE-0005626ydiHCDScomplement17649341765122Upstream
ABE-0285732matS20protein_bindforward17652131765225Upstream
ABE-0005628menICDScomplement17652221765632Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.