Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005619 (sufC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005619 showshow history
Names
sufC JW1672 ECK1678 ynhD b1682
Product
transport protein associated with Fe-S cluster assembly
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1761766 1762512 747 249
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000619
EnteroFam0005619: Trusted threshold=700.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR010230 (IPR010230 FeS cluster assembly SUF system, ATPase SufC) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010230
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name sufC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1678 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1672 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ynhD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b1682 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Automated Process Approved product transport protein associated with Fe-S cluster assembly Experimental - PubMed ID: 21150445 Sep 2007
Person Uncurated alternate product name putative transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name component of SufBCD complex, ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved alternate product name SufBCD Fe-S cluster assembly scaffold protein, ATP-binding protein Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name putative ATP-binding component of a transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005619: Trusted threshold=700.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000619
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010230 FeS cluster assembly SUF system, ATPase SufC Protein Sequence Similarity - InterPro Domain: IPR010230
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13964 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946128 Published Annotation - Entrez Gene Database ID: 946128
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P77499 Published Annotation - Swiss-Prot Accession Number: P77499 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77499 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787972 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005619 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated molecular interaction Interacts with the product of sufB ASAP:5621:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note putative ATP-binding component of a transport system; GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74752.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 3.70
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 6.29
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010230
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000619 sufC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002106 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001545 sufC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001525 sufC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000236 sufC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001913 sufC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001334 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003018 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001797 sufC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002308 sufC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002089 sufC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002689 sufC CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006413 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020088 sufC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301261 sufC CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001843 sufC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001881 sufC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004231 sufC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007727 sufC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001641 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010253 sufC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001599 sufC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002706 sufC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007653 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009254 sufC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008180 SufC CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078195 sufC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001892 sufC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002172 sufC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007414 sufC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009072 sufC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001884 sufC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006335 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006191 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005779 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010083 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008643 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010020 sufC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007236 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007662 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010871 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008620 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009872 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007833 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007849 sufC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010077 sufC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026471 sufC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006785 sufC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006438 sufC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002084 sufC CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001580 sufC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001725 sufC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002392 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002040 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002227 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001885 sufC CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176043 sufC CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001836 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001513 sufC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132372 sufC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004190 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001881 sufC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002056 sufC CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002145 sufC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004268 sufC CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001077 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004022 sufC CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001086 sufC CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003045 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001776 sufC CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002448 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009424 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002494 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289807 sufC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004918 sufC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062120 sufC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001021 sufC CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003799 sufC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002419 sufC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007430 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142860 sufC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005974 sufC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001678 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001620 sufC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006240 sufC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005466 sufC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005285 sufC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008181 sufC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005867 sufC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004841 sufC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004881 sufC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007855 sufC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004970 sufC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005851 sufC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004938 sufC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001493 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001483 sufC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001970 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006094 sufC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006890 sufC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005556 sufC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008419 sufC CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108564 sufC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082953 sufC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001667 sufC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094644 sufC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007996 sufC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008403 sufC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008453 sufC CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003607 sufC CDS
Person Approved Go view Shigella boydii 227 ADV-0001602 ynhD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007292 sufC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007692 sufC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002207 ynhD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072935 sufC CDS
Person Approved Go view Shigella flexneri 301 ABT-0088017 sufC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001815 ynhD CDS
Person Approved Go view Shigella sonnei 046 ADD-0001601 sufC CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000533 sufC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000559 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006371 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000894 sufC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000225 sufC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001480 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239522 sufC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006706 sufC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002114 sufC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004892 sufC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001060 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123266 sufC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008323 sufC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007759 sufC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001541 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008875 sufC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006142 sufC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031633 sufC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008050 sufC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002239 sufC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000883 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006967 sufC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005710 sufC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002399 sufC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002845 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002176 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014378 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003621 sufC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21938mutantTn5 InsertionRequest the StrainABE-0005619sufCynhD::Tn5KAN-2 at position 496 in Minus orientation ,+ pKD460Blattner Laboratory
FB22924mutantTn5 InsertionRequest the StrainABE-0005619sufCynhD::Tn5(KAN-2) at position 496 in Minus orientation ,+ pKD46 0Blattner Laboratory
FB23476mutantTn5 InsertionRequest the StrainABE-0005619sufCynhD::Tn5KAN-2 at position 496 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1756766 to 1767512
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005600pykFCDSforward17556981757110Downstream
ABE-0005603lppCDSforward17574211757657Downstream
ABE-0005605ldtECDScomplement17577211758725Downstream
ABE-0005608sufECDScomplement17588741759290Downstream
ABE-0005610sufSCDScomplement17593031760523Downstream
ABE-0005617sufDCDScomplement17605201761791Overlaps Downstream
ABE-0005619sufCCDScomplement17617661762512Matches
ABE-0005621sufBCDScomplement17625221764009Upstream
ABE-0005624sufACDScomplement17640181764386Upstream
ABE-0047250rydBncRNAcomplement17647131764780Upstream
ABE-0005626ydiHCDScomplement17649341765122Upstream
ABE-0285732matS20protein_bindforward17652131765225Upstream
ABE-0005628menICDScomplement17652221765632Upstream
ABE-0005632ydiJCDScomplement17656291768685Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.