Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005621 (sufB) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005621 showshow history
Names
sufB JW5273 ECK1679 ynhE b1683
Product
Fe-S cluster scaffold complex subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1762522 1764009 1488 496
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000620
EnteroFam0005621: Trusted threshold=1448.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR010231 (IPR010231 SUF system FeS cluster assembly, SufB) Apr 2008
Automated Process Approved IPR000825 (IPR000825 SUF system FeS cluster assembly, SufBD) Apr 2008
Automated Process Approved IPR037284 (IPR037284 SUF system FeS cluster assembly, SufBD superfamily) Jul 2018
Automated Process Approved PF01458 (PF01458 SUF system FeS cluster assembly, SufBD) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000825, IPR010231
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name sufB Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ynhE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW5273 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1679 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1683 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product Fe-S cluster scaffold complex subunit Published Annotation - EcoCyc Accession Number: G6909
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Person Uncurated alternate product name putative transport protein Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name component of SufBCD Fe-S cluster assembly scaffold Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name component of SufBCD complex Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005621: Trusted threshold=1448.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000620
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR010231 SUF system FeS cluster assembly, SufB Protein Sequence Similarity - InterPro Domain: IPR010231
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR037284 SUF system FeS cluster assembly, SufBD superfamily Protein Sequence Similarity - InterPro Domain: IPR037284
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000825 SUF system FeS cluster assembly, SufBD Protein Sequence Similarity - InterPro Domain: IPR000825
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01458 SUF system FeS cluster assembly, SufBD Protein Sequence Similarity - PFAM Model Name: PF01458
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 2.3.4 (information transfer; protein related; chaperoning, folding) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87081955 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P77522 Published Annotation - Swiss-Prot Accession Number: P77522 Jan 2005
Automated Process Approved db xref GeneID:945753 Published Annotation - Entrez Gene Database ID: 945753
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77522 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005621 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13965 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved molecular interaction Interacts with the product of sufC ASAP:5619:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Person Approved molecular interaction Interacts with the product of sufD ASAP:5617:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note GO_process: GO:0006457 - protein folding Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74753.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0016226 iron-sulfur cluster assembly GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR000825, IPR010231
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006457 protein folding Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000620 sufB CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002105 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001607 sufB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001527 sufB CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000567 sufB CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001875 sufB CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001333 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0003017 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001796 sufB CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002309 sufB CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002088 sufB CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002688 sufB CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006412 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020089 sufB CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002364 sufB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301259 sufB CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001842 sufB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001882 sufB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004232 sufB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007728 sufB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001642 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010254 sufB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001600 sufB CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002705 sufB CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007652 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009253 sufB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008179 SufB CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078196 sufB CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001893 sufB CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002173 sufB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007413 sufB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009073 sufB CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001885 sufB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006336 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006192 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005780 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010084 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008644 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010019 sufB CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007237 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007661 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010870 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008621 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009873 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007832 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007848 sufB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010078 sufB CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026472 sufB CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006784 sufB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006439 sufB CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002085 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001581 sufB CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001726 sufB CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002391 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002041 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002226 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001886 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176044 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001837 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001512 sufB CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132373 sufB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004189 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001882 sufB CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002057 sufB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002146 sufB CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004267 sufB CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001076 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004023 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001085 sufB CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003046 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001775 sufB CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002449 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009423 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002493 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289806 sufB CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004917 sufB CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062119 sufB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001020 sufB CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003800 sufB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002418 sufB CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007431 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142863 sufB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005975 sufB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001679 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001619 sufB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006241 sufB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005470 sufB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005289 sufB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008182 sufB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005866 sufB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004840 sufB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004880 sufB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007854 sufB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004969 sufB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005850 sufB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004939 sufB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001494 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001484 sufB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001971 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006093 sufB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006891 sufB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005555 sufB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008418 sufB CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108568 sufB CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082952 sufB CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001666 sufB CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094641 sufB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0007997 sufB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008402 sufB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008452 sufB CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003608 sufB CDS
Person Approved Go view Shigella boydii 227 ADV-0001601 ynhE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007691 sufB CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072936 sufB CDS
Person Approved Go view Shigella flexneri 301 ABT-0088018 sufB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001816 ynhE CDS
Person Approved Go view Shigella sonnei 046 ADD-0001600 sufB CDS
Person Uncurated Go view Sodalis glossinidius morsitans AEB-0001485 CDS
Person Uncurated Go view Wigglesworthia brevipalpis ACB-0135866 ynhE CDS
Person Approved Go view Wigglesworthia morsitans AEQ-0000534 sufB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000560 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006375 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000893 sufB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000224 sufB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001481 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239523 sufB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006707 sufB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002115 sufB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004893 sufB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001059 CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123270 sufB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008322 sufB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007760 sufB CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008876 sufB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006143 sufB CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031632 sufB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008049 sufB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002240 sufB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000882 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006965 sufB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005709 sufB CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002400 sufB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002846 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002175 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014388 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003620 sufB CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21939mutantTn5 InsertionRequest the StrainABE-0005621sufBynhE::Tn5KAN-2 at position 660 in Plus orientation ,+ pKD460Blattner Laboratory
FB23477mutantTn5 InsertionRequest the StrainABE-0005621sufBynhE::Tn5KAN-2 at position 660 in Plus orientation ,- pKD46 RESEQD By acciden5Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1757522 to 1769009
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005603lppCDSforward17574211757657Downstream
ABE-0005605ldtECDScomplement17577211758725Downstream
ABE-0005608sufECDScomplement17588741759290Downstream
ABE-0005610sufSCDScomplement17593031760523Downstream
ABE-0005617sufDCDScomplement17605201761791Downstream
ABE-0005619sufCCDScomplement17617661762512Downstream
ABE-0005621sufBCDScomplement17625221764009Matches
ABE-0005624sufACDScomplement17640181764386Upstream
ABE-0047250rydBncRNAcomplement17647131764780Upstream
ABE-0005626ydiHCDScomplement17649341765122Upstream
ABE-0285732matS20protein_bindforward17652131765225Upstream
ABE-0005628menICDScomplement17652221765632Upstream
ABE-0005632ydiJCDScomplement17656291768685Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.