Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005653 (aroD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005653 showshow history
Names
aroD JW1683 ECK1691 b1693
Product
3-dehydroquinate dehydratase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1774686 1775444 759 253
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001381 (IPR001381 3-dehydroquinate dehydratase type I) Apr 2008
Automated Process Approved IPR013785 (IPR013785 Aldolase-type TIM barrel) Apr 2008
Automated Process Approved PF01487 (PF01487 Type I 3-dehydroquinase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009423 chorismate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001381
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003855 3-dehydroquinate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001381
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name aroD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1691 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1683 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1693 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product 3-dehydroquinate dehydratase Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family PF01487 Type I 3-dehydroquinase Protein Sequence Similarity - PFAM Model Name: PF01487
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR013785 Aldolase-type TIM barrel Protein Sequence Similarity - InterPro Domain: IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001381 3-dehydroquinate dehydratase type I Protein Sequence Similarity - InterPro Domain: IPR001381
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 4.2.1.10 Published Annotation - Swiss-Prot Accession Number: P05194 Feb 2006
Person Uncurated MultiFun 1.5.1.20 (metabolism; building block biosynthesis; amino acids; chorismate) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10076 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P05194 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005653 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P05194 Published Annotation - Swiss-Prot Accession Number: P05194 Jan 2005
Automated Process Approved db xref GeneID:946210 Published Annotation - Entrez Gene Database ID: 946210
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1787984 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Chorismate Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_process: GO:0009423 - chorismate biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74763.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009423 chorismate biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0009073 aromatic amino acid family biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001381
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0003855 3-dehydroquinate dehydratase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001381
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013785
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004384 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002922 aroD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003201 aroD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007738 aroD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002986 aroD CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002074 aroD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002674 aroD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000831 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004245 aroD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007740 aroD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001652 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010268 aroD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001609 aroD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002695 aroD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007639 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009241 aroD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008167 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078206 aroD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001903 aroD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002183 aroD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007401 aroD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009086 aroD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001897 aroD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006346 aroD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006202 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005792 aroD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010096 aroD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008656 aroD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010007 aroD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007249 aroD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007649 aroD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010858 aroD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008633 aroD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009886 aroD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007820 aroD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007836 aroD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010090 aroD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026482 aroD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006772 aroD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006451 aroD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002095 aroD CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0001591 aroD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001738 aroD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002381 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002052 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002215 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001896 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176055 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001847 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001502 aroD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132383 aroD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004179 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001892 aroD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000074 aroD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0005999 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005988 aroD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001688 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001605 aroD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006254 aroD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005508 aroD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005326 aroD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008195 aroD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005853 aroD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004827 aroD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004867 aroD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007841 aroD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004956 aroD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005837 aroD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004952 aroD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001503 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001493 aroD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001987 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006080 aroD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006904 aroD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005542 aroD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008666 aroD CDS
Person Uncurated Go view Salmonella Typhi CT18 ABX-0108583 aroD CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082945 aroD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001651 aroD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094608 aroD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008010 aroD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008388 aroD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008439 aroD CDS
Person Approved Go view Shigella boydii 227 ADV-0001592 aroD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007307 aroD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007678 aroD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001696 aroD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072947 aroD CDS
Person Approved Go view Shigella flexneri 301 ABT-0088028 aroD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001831 aroD CDS
Person Approved Go view Shigella sonnei 046 ADD-0001586 aroD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003808 aroD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20424mutantTn5 InsertionRequest the StrainABE-0005653aroDaroD::Tn5KAN-2 at position 173 in Minus orientation ,- pKD460Blattner Laboratory
FB20425mutantTn5 InsertionRequest the StrainABE-0005653aroDaroD::Tn5KAN-2 at position 173 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1769686 to 1780444
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005637ydiKCDSforward17690741770186Upstream
ABE-0047251rprAncRNAforward17703721770477Upstream
ABE-0005641ydiLCDSforward17706151770971Upstream
ABE-0005645ydiMCDSforward17710711772285Upstream
ABE-0005648ydiNCDSforward17725121773777Upstream
ABE-0005651ydiBCDSforward17737891774655Upstream
ABE-0005653aroDCDSforward17746861775444Matches
ABE-0005656ydiFCDSforward17755871777182Downstream
ABE-0005658ydiOCDSforward17771961778347Downstream
ABE-0005660ydiPCDScomplement17783901779301Downstream
ABE-0005666ydiQCDSforward17796171780381Downstream
ABE-0005668ydiRCDSforward17804011781339Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.