Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005656 (ydiF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005656 showshow history
Names
ydiF JW1684 ECK1692 b1694
Product
acyl-CoA transferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1775587 1777182 1596 532
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004165 (IPR004165 Coenzyme A transferase family I) Apr 2008
Automated Process Approved IPR014388 (IPR014388 3-oxoacid CoA-transferase) Apr 2008
Automated Process Approved IPR037171 (IPR037171 NagB/RpiA transferase-like) Jul 2018
Automated Process Approved PF01144 (PF01144 Coenzyme A transferase) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008410 CoA-transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ydiF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1692 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1684 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1694 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product acyl-CoA transferase Experimental - PubMed ID: 16253988
Reference: Escherichia coli EDL933 (EHEC) 		Mar 2008
Automated Process Approved alternate product name fused predicted acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR004165 Coenzyme A transferase family I Protein Sequence Similarity - InterPro Domain: IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR037171 NagB/RpiA transferase-like Protein Sequence Similarity - InterPro Domain: IPR037171
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR014388 3-oxoacid CoA-transferase Protein Sequence Similarity - InterPro Domain: IPR014388
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01144 Coenzyme A transferase Protein Sequence Similarity - PFAM Model Name: PF01144
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated EC number 2.8.3.5 Protein Sequence Similarity - InterPro Domain: IPR014388
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Uncurated EC number 2.8.3.- Published Annotation - Database Name: EC2GO: GO:0008410
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.2 (metabolism; carbon utilization; fatty acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005656 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1787985 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946211 Published Annotation - Entrez Gene Database ID: 946211
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37766 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P37766 Published Annotation - Swiss-Prot Accession Number: P37766 Jan 2005
Automated Process Approved db xref EcoGene:EG12432 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note putative enzyme; GO_process: GO:0019395 - fatty acid oxidation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74764.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0019395 fatty acid oxidation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0008410 CoA-transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004165
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004902 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003231 ydiF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003415 ydiF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007739 ydiF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002938 ydiF CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002073 atoD_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002673 atoD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000832 CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001304 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004246 pct CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007741 pct CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001653 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010269 pct CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001610 ydiF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002694 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007638 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009240 pct CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008166 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078207 ydiF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001904 ydiF CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007400 pct CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009087 pct CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001898 ydiF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006347 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006203 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005793 pct CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010097 pct CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008657 pct CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010006 pct CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007250 pct CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007648 pct CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010857 pct CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008634 pct CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009887 pct CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007819 pct CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007835 pct CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010091 pct CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026483 ydiF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006771 ydiF_1 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002096 CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001739 ydiF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002380 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002053 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002214 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001897 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176056 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001848 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001501 pct CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132384 ydiF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004178 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001893 ydiF CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006000 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005989 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001604 ydiF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006255 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005511 ydiF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005329 ydiF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008196 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005852 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004826 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004866 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007840 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004955 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005836 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004953 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001988 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006079 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006905 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005541 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008667 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001650 ydiF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094606 ydiF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008011 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008387 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008438 CDS
Person Uncurated Go view Shigella boydii 227 ADV-0001591 ydiF pseudogene
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007308 pct CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003807 atoD_3 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20426mutantTn5 InsertionRequest the StrainABE-0005656ydiFydiF::Tn5KAN-I-SceI at position 831 in Plus orientation ,+ pKD460Blattner Laboratory
FB20427mutantTn5 InsertionRequest the StrainABE-0005656ydiFydiF::Tn5KAN-I-SceI at position 831 in Plus orientation ,- pKD465Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1770587 to 1782182
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005641ydiLCDSforward17706151770971Upstream
ABE-0005645ydiMCDSforward17710711772285Upstream
ABE-0005648ydiNCDSforward17725121773777Upstream
ABE-0005651ydiBCDSforward17737891774655Upstream
ABE-0005653aroDCDSforward17746861775444Upstream
ABE-0005656ydiFCDSforward17755871777182Matches
ABE-0005658ydiOCDSforward17771961778347Downstream
ABE-0005660ydiPCDScomplement17783901779301Downstream
ABE-0005666ydiQCDSforward17796171780381Downstream
ABE-0005668ydiRCDSforward17804011781339Downstream
ABE-0005671ydiSCDSforward17813951782684Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.