Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005658 (ydiO) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005658 showshow history
Names
ydiO JW5275 ECK1693 b1695
Product
putative acyl-CoA dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1777196 1778347 1152 384
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006089 (IPR006089 Acyl-CoA dehydrogenase, conserved site) Apr 2008
Automated Process Approved IPR009100 (IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily) Apr 2008
Automated Process Approved IPR009075 (IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal) Apr 2008
Automated Process Approved IPR013786 (IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal) Apr 2008
Automated Process Approved IPR006091 (IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain) Apr 2008
Automated Process Approved IPR013764 (IPR013764 (DEPRECATED) Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal) Apr 2008
Automated Process Approved IPR006092 (IPR006092 (DEPRECATED) Acyl-CoA dehydrogenase, N-terminal) Apr 2008
Automated Process Approved IPR006090 (IPR006090 (DEPRECATED) Acyl-CoA oxidase/dehydrogenase, type 1) Apr 2008
Automated Process Approved IPR036250 (IPR036250 Acyl-CoA dehydrogenase-like, C-terminal) Jul 2018
Automated Process Approved PF02770 (PF02770 Acyl-CoA dehydrogenase, middle domain) Jul 2018
Automated Process Approved PF00441 (PF00441 Acyl-CoA dehydrogenase, C-terminal domain) Jul 2018
Automated Process Approved PF02771 (PF02771 Acyl-CoA dehydrogenase, N-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006091, IPR009075, IPR013786, IPR009100, IPR036250
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006089
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003995 acyl-CoA dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006089
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ydiO Published Annotation - Swiss-Prot Accession Number: P76200 Aug 2002
Person Approved synonym ECK1693 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5275 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1695 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product putative acyl-CoA dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name putative acyl-CoA dehydrogenase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative oxidoreductase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal Protein Sequence Similarity - InterPro Domain: IPR009075
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR013786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006089 Acyl-CoA dehydrogenase, conserved site Protein Sequence Similarity - InterPro Domain: IPR006089
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain Protein Sequence Similarity - InterPro Domain: IPR006091
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009100
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR013764 (DEPRECATED) Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal Protein Sequence Similarity - InterPro Domain: IPR013764
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006092 (DEPRECATED) Acyl-CoA dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR006092
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006090 (DEPRECATED) Acyl-CoA oxidase/dehydrogenase, type 1 Protein Sequence Similarity - InterPro Domain: IPR006090
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00441 Acyl-CoA dehydrogenase, C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF00441
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02771 Acyl-CoA dehydrogenase, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02771
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02770 Acyl-CoA dehydrogenase, middle domain Protein Sequence Similarity - PFAM Model Name: PF02770
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036250 Acyl-CoA dehydrogenase-like, C-terminal Protein Sequence Similarity - InterPro Domain: IPR036250
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 1.3.-.- Published Annotation - Database Name: EC2GO: GO:0016627
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 1.3.99.- Protein Sequence Similarity - InterPro Domain: IPR006092
Reference: Escherichia coli K-12 MG1655 		Dec 2008
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005658 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:87081958 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945626 Published Annotation - Entrez Gene Database ID: 945626
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A9U8 Published Annotation - Swiss-Prot Accession Number: P0A9U8 Jan 2006
Automated Process Approved db xref EcoGene:EG13974 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A9U8 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note putative oxidoreductase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74765.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR006091, IPR009075, IPR013786, IPR009100, IPR036250
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006089
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0050660 flavin adenine dinucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013786
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003995 acyl-CoA dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006089
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003798 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003310 ydiO CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003663 ydiO CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0004428 ydiO CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003152 ydiO CDS
Ortholog
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002072 caiA_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002672 caiA_2 CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000833 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004247 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007742 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001654 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001611 ydiO CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002693 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007637 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009239 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008165 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078208 ydiO CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001905 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002186 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007399 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009088 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001899 ydiO CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006348 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006204 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005794 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010098 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008658 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010005 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007251 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007647 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010856 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008635 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009888 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007818 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007834 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010092 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026484 ydiO CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006770 caiA_2 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006453 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002097 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001592 ydiO CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001740 ydiO CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002379 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002054 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002213 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001898 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176057 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001849 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001500 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132385 ydiO CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004177 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001894 ydiO CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006001 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005990 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001603 ydiO CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006256 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005513 ydiO CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005331 ydiO CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008197 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005851 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004825 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004865 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007839 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004954 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005835 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004954 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001989 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006078 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006906 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005540 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008668 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001649 ydiO CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094604 ydiO CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008012 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008386 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008437 CDS
Person Approved Go view Shigella boydii 227 ADV-0001590 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007309 CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002061 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003806 caiA CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21946mutantTn5 InsertionRequest the StrainABE-0005658ydiOb1695::Tn5KAN-2 at position 169 in Minus orientation ,+ pKD460Blattner Laboratory
FB23483mutantTn5 InsertionRequest the StrainABE-0005658ydiOb1695::Tn5KAN-2 at position 169 in Minus orientation ,- pKD46 RESEQD By acciden5Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1772196 to 1783347
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005645ydiMCDSforward17710711772285Upstream
ABE-0005648ydiNCDSforward17725121773777Upstream
ABE-0005651ydiBCDSforward17737891774655Upstream
ABE-0005653aroDCDSforward17746861775444Upstream
ABE-0005656ydiFCDSforward17755871777182Upstream
ABE-0005658ydiOCDSforward17771961778347Matches
ABE-0005660ydiPCDScomplement17783901779301Downstream
ABE-0005666ydiQCDSforward17796171780381Downstream
ABE-0005668ydiRCDSforward17804011781339Downstream
ABE-0005671ydiSCDSforward17813951782684Downstream
ABE-0005674ydiTCDSforward17826811782974Downstream
ABE-0005676fadKCDSforward17830311784677Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.