Escherichia coli K-12 MG1655
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005676 (fadK) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005676 showshow history
Names
fadK JW5910 ECK1699 ydiD b1701
Product
short chain acyl-CoA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1783031 1784677 1647 549
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000873 (IPR000873 AMP-dependent synthetase/ligase) Apr 2008
Automated Process Approved IPR025110 (IPR025110 AMP-binding enzyme, C-terminal domain) Jul 2018
Automated Process Approved PF00501 (PF00501 AMP-binding enzyme) Jul 2018
Automated Process Approved PF13193 (PF13193 AMP-binding enzyme C-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 MG1655
Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fadK Published Annotation - PubMed ID: 15213221
Reference: Escherichia coli K-12 MG1655
Apr 2007
Person Approved synonym ECK1699 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5910 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ydiD Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Person Approved locus tag b1701 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product short chain acyl-CoA synthetase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Oct 2021
Person Uncurated alternate product name putative CoA-dependent ligase Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name putative ligase/synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Jan 2006
Protein Family
Automated Process Approved protein family IPR000873 AMP-dependent synthetase/ligase Protein Sequence Similarity - InterPro Domain: IPR000873
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Approved protein family IPR025110 AMP-binding enzyme, C-terminal domain Protein Sequence Similarity - InterPro Domain: IPR025110
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF00501 AMP-binding enzyme Protein Sequence Similarity - PFAM Model Name: PF00501
Reference: Escherichia coli K-12 MG1655
Jul 2018
Automated Process Approved protein family PF13193 AMP-binding enzyme C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF13193
Reference: Escherichia coli K-12 MG1655
Jul 2018
Other
Person Approved EC number 6.2.1.- Published Annotation - Swiss-Prot Accession Number: P38135 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved comment The coordinates of fadK have been changed from those reported in the GenBank entry (GBAN:U00096.2) to correspond to the start site predicted in EcoGene (EG12357) and by GeneMark.hmm using multiple models, removing 18 codons from the N-terminus. Published Annotation in EcoGene - EG Number: EG12357
Reference: Escherichia coli K-12 MG1655
Apr 2007
Automated Process Approved db xref ASAP:ABE-0005676 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GI:145693145 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref EcoGene:EG12357 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved db xref GeneID:946213 Published Annotation - Entrez Gene Database ID: 946213
Reference: Escherichia coli K-12 MG1655
Jun 2009
Automated Process Approved db xref UniProtKB/Swiss-Prot:P38135 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Person Approved db xref UniProtKB:P38135 Published Annotation - Swiss-Prot Accession Number: P38135 Jan 2005
Person Approved function putative enzyme; Not classified Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655
Oct 1998
Automated Process Approved note putative ligase/synthetase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Approved protein id AAC74771.2 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655
Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655
Jan 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655
Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 MG1655
Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655
Feb 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000873
Reference: Escherichia coli K-12 MG1655
Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0004963 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003445 fadK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003719 fadK CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0007967 fadK CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003202 fadK CDS
Ortholog
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002066 entE_2 CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002666 entE_2 CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0000840 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004258 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007749 fadK CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001660 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010277 fadK CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001617 ydiD CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002686 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007631 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009233 fadK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008158 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078215 fadK CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001912 fadK CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002193 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007392 fadK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009095 fadK CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001905 fadK CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006355 fadK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006211 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007811 fadK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010099 fadK CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026490 fadK CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006763 fadK CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002104 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001598 ydiD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001746 ydiD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002372 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002061 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002206 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001905 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001856 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001493 fadK CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132391 fadK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004171 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001901 ydiD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006013 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005996 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001596 ydiD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006263 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005534 ydiD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005352 ydiD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008203 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005844 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004819 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004859 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007832 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004947 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005829 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004961 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0001996 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006071 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006912 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005534 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008674 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001642 ydiD CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094586 fadK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008018 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008379 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008429 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265550 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007315 fadK CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072729 ydiD CDS
Person Approved Go view Shigella flexneri 301 ABT-0087845 ydiD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001619 ydiD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003800 irp5_2 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)

Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1778031 to 1789677
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005658ydiOCDSforward17771961778347Upstream
ABE-0005660ydiPCDScomplement17783901779301Upstream
ABE-0005666ydiQCDSforward17796171780381Upstream
ABE-0005668ydiRCDSforward17804011781339Upstream
ABE-0005671ydiSCDSforward17813951782684Upstream
ABE-0005674ydiTCDSforward17826811782974Upstream
ABE-0005676fadKCDSforward17830311784677Matches
ABE-0005678ppsACDScomplement17847341787112Downstream
ABE-0005682ppsRCDSforward17874451788278Downstream
ABE-0005686aroHCDSforward17884351789481Downstream
ABE-0005692ydiECDSforward17896131789804Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.