Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005707 (btuD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005707 showshow history
Names
btuD JW1699 ECK1707 b1709
Product
ATP-binding component of an ABC superfamily vitamin B12 transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1792809 1793558 750 250
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000629
EnteroFam0005707: Trusted threshold=644.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Apr 2008
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Apr 2008
Automated Process Approved IPR027417 (IPR027417 P-loop containing nucleoside triphosphate hydrolase) Jul 2018
Automated Process Approved PF00005 (PF00005 ABC transporter) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009236 cobalamin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name btuD Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1699 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1707 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1709 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product ATP-binding component of an ABC superfamily vitamin B12 transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name ATP-binding component of vitamin B12 transport system Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name vitamin B12 transport protein (ABC superfamily, atp_bind) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005707: Trusted threshold=644.2; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000629
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF00005 ABC transporter Protein Sequence Similarity - PFAM Model Name: PF00005
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR027417 P-loop containing nucleoside triphosphate hydrolase Protein Sequence Similarity - InterPro Domain: IPR027417
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 3.6.1.3 Published Annotation - Database Name: EC2GO: GO:0016887
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated EC number 7.6.2.8 Published Annotation - Swiss-Prot Accession Number: P06611
Reference: Escherichia coli K-12 		Dec 2019
Person Uncurated MultiFun 4.3.A.1.a (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily ATP binding cytoplasmic component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.187 (transport; substrate; vitamin B12) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.13 (metabolism; building block biosynthesis; cofactor, small molecule carrier; cobalamin (Vitamin B12)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005707 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P06611 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10128 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945751 Published Annotation - Entrez Gene Database ID: 945751
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P06611 Published Annotation - Swiss-Prot Accession Number: P06611 Jan 2005
Automated Process Approved db xref GI:1788002 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Other Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note ATP-binding component of vitamin B12 transport system; GO_component: GO:0005737 - cytoplasm Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74779.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009236 cobalamin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000629 btuD CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000545 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001610 btuD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001475 btuD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001737 btuD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001584 btuD CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001765 btuD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002341 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002057 btuD CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002653 btuD CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006364 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020062 btuD CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002471 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002321 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004265 btuD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007758 btuD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001669 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010285 btuD CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001624 btuC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002678 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007623 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009224 btuD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008149 BtuD CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078223 btuD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001921 btuD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002201 btuD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007383 btuD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009104 btuD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001913 btuD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006365 btuD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006221 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005810 btuD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010114 btuD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008674 btuD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007587 btuD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007267 btuD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007631 btuD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010840 btuD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008651 btuD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009904 btuD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007802 btuD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007818 btuD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010108 btuD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026498 btuD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006754 btuD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006465 btuD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002112 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001606 btuD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001754 btuD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002363 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002070 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002197 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001913 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176073 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001865 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001480 btuD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132399 btuD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004163 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001909 btuD CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002084 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002172 btuD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004248 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006293 CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062092 btuD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001067 btuD CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003803 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002396 btuD CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007453 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142943 btuD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006005 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001697 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001587 btuD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006272 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005557 btuD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005374 btuD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008212 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005834 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004810 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004850 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007823 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004937 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005820 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004970 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001511 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001501 btuD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002007 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006062 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006921 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005525 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008683 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108601 btuD CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082937 btuD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001631 btuD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094561 btuD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008027 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008370 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008419 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003638 CDS
Person Approved Go view Shigella boydii 227 ADV-0001571 btuD CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007324 btuD CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008141 btuD CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002085 btuD CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072721 btuD CDS
Person Approved Go view Shigella flexneri 301 ABT-0087838 btuD CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001609 btuD CDS
Person Approved Go view Shigella sonnei 046 ADD-0001572 btuD CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001317 VC1245 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003262 btuD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000581 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006443 btuD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000871 btuD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000203 btuD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001501 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239573 btuD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006729 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002137 btuD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004913 btuD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001041 btuD CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123342 btuD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008302 btuD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007780 btuD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003205 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008896 btuD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006164 btuD CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031613 btuD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008027 btuD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002262 btuD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000861 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006945 btuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005689 btuD CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002418 btuD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002868 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002154 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014474 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003594 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20435mutantTn5 InsertionRequest the StrainABE-0005707btuDbtuD::Tn5KAN-2 at position 105 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1787809 to 1798558
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005682ppsRCDSforward17874451788278Downstream
ABE-0005686aroHCDSforward17884351789481Downstream
ABE-0005692ydiECDSforward17896131789804Downstream
ABE-0005694selOCDScomplement17898081791244Downstream
ABE-0005696rflPCDScomplement17913071792020Downstream
ABE-0005704nlpCCDScomplement17922671792731Downstream
ABE-0005707btuDCDScomplement17928091793558Matches
ABE-0005709btuECDScomplement17935581794109Overlaps Upstream
ABE-0005712btuCCDScomplement17941721795152Upstream
ABE-0005715ihfACDScomplement17952531795552Upstream
ABE-0005717pheTCDScomplement17955571797944Upstream
ABE-0005722pheSCDScomplement17979591798942Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.