Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005712 (btuC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005712 showshow history
Names
btuC JW1701 ECK1709 b1711
Product
membrane component of an ABC superfamily vitamin B12 transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1794172 1795152 981 327
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000631
EnteroFam0005712: Trusted threshold=758; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR000522 (IPR000522 ABC transporter, permease protein, BtuC-like) Apr 2008
Automated Process Approved IPR037294 (IPR037294 ABC transporter, BtuC-like) Jul 2018
Automated Process Approved PF01032 (PF01032 FecCD transport family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009236 cobalamin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name btuC Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1709 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1701 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1711 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product membrane component of an ABC superfamily vitamin B12 transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name vitamin B12 transport permease protein Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Uncurated alternate product name vitamin B12 transport protein (ABC superfamily, membrane) Published Annotation - Database Name: GenProtEC Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005712: Trusted threshold=758; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000631
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR037294 ABC transporter, BtuC-like Protein Sequence Similarity - InterPro Domain: IPR037294
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01032 FecCD transport family Protein Sequence Similarity - PFAM Model Name: PF01032
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR000522 ABC transporter, permease protein, BtuC-like Protein Sequence Similarity - InterPro Domain: IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Uncurated MultiFun 6.1 (cell structure; membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.3 (location of gene products; inner membrane) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.S.187 (transport; substrate; vitamin B12) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 4.3.A.1.m (transport; Primary Active Transporters; Pyrophosphate Bond (ATP, GTP, P2) Hydrolysis-driven Active Transporters; The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases; ABC superfamily, membrane component) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.5.3.13 (metabolism; building block biosynthesis; cofactor, small molecule carrier; cobalamin (Vitamin B12)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945877 Published Annotation - Entrez Gene Database ID: 945877
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P06609 Published Annotation - Swiss-Prot Accession Number: P06609 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P06609 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788004 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10127 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005712 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function transport; Transport of small molecules: Other Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note vitamin B12 transport permease protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74781.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved subcellular localization Cytoplasmic Membrane Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0009236 cobalamin biosynthetic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005886 plasma membrane GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000522
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000631 btuC CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000547 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001554 btuC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001444 btuC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001739 btuC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0001524 btuC CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001313 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002513 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001763 CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002343 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002055 btuC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002651 btuC_2 CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006362 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0046586 btuC CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002473 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002319 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301223 hmuU CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001893 hmuU CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004267 btuC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007760 btuC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001671 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010287 btuC CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001626 btuC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002676 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007620 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009222 btuC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008147 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078225 btuC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001923 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002203 btuC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007381 btuC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009106 btuC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001915 btuC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006367 btuC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006223 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005812 btuC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010116 btuC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008676 btuC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007585 btuC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007269 btuC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007629 btuC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010838 btuC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008653 btuC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009906 btuC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007800 btuC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007816 btuC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010110 btuC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026500 btuC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006752 btuC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006467 btuC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002114 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001608 btuC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001756 btuC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002361 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002072 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002195 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001915 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176075 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001867 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001478 btuC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132401 btuC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004161 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001911 btuC CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002808 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002175 btuC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004246 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006290 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001062 CDS
Automated Process Approved Go view Pantoea agglomerans SL1-M5 ALY-0004037 CDS
Automated Process Approved Go view Pantoea ananatis AJ13355 AOV-0001073 btuC CDS
Automated Process Approved Go view Pantoea ananatis B1-9 APL-0003059 CDS
Automated Process Approved Go view Pantoea ananatis LMG 20103 AKB-0001761 btuC CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002462 CDS
Automated Process Approved Go view Pantoea sp. At-9b AGM-0009408 CDS
Automated Process Approved Go view Pantoea sp. aB AJV-0002479 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289789 btuC CDS
Automated Process Approved Go view Pantoea vagans C9-1 ALK-0004904 btuC CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062090 btuC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004006 CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001670 btuC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002394 btuC CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0007455 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142944 btuC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006007 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001699 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001585 btuC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006274 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005565 btuC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005382 btuC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008214 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005832 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004808 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004848 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007821 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004935 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005818 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004972 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001513 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001503 btuC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002009 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006060 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006923 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005523 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008685 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108609 btuC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082935 btuC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001629 btuC CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094557 btuC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008029 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008368 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008417 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003640 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0267316 hmuU CDS
Person Approved Go view Shigella boydii 227 ADV-0001569 btuC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007326 btuC CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002087 btuC CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072719 btuC CDS
Person Approved Go view Shigella flexneri 301 ABT-0087836 btuC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001607 btuC CDS
Person Approved Go view Shigella sonnei 046 ADD-0001570 btuC CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001316 VC1244 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003260 btuC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000583 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006449 btuC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000869 btuC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000201 btuC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001503 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239575 btuC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006731 btuC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002139 btuC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004915 btuC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001039 btuC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123349 btuC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008300 btuC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007782 btuC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003207 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008898 btuC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006166 btuC CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031611 btuC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008025 btuC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002264 btuC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000859 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006943 btuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005687 btuC CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002420 btuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002870 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002152 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014488 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003592 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20436mutantTn5 InsertionRequest the StrainABE-0005712btuCbtuC::Tn5KAN-2 at position 81 in Plus orientation ,+ pKD46 Insertion site is approximate0Blattner Laboratory
FB20437mutantTn5 InsertionRequest the StrainABE-0005712btuCbtuC::Tn5KAN-I-SceI at position 321 in Minus orientation ,+ pKD460Blattner Laboratory
FB22853mutantTn5 InsertionRequest the StrainABE-0005712btuCbtuC::Tn5(KAN-2) at position 321 in Minus orientation ,+ pKD46 0Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1789172 to 1800152
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005686aroHCDSforward17884351789481Downstream
ABE-0005692ydiECDSforward17896131789804Downstream
ABE-0005694selOCDScomplement17898081791244Downstream
ABE-0005696rflPCDScomplement17913071792020Downstream
ABE-0005704nlpCCDScomplement17922671792731Downstream
ABE-0005707btuDCDScomplement17928091793558Downstream
ABE-0005709btuECDScomplement17935581794109Downstream
ABE-0005712btuCCDScomplement17941721795152Matches
ABE-0005715ihfACDScomplement17952531795552Upstream
ABE-0005717pheTCDScomplement17955571797944Upstream
ABE-0005722pheSCDScomplement17979591798942Upstream
ABE-0005727pheMCDScomplement17992261799270Upstream
ABE-0005729rplTCDScomplement17993931799749Upstream
ABE-0005732rpmICDScomplement17998021799999Upstream
ABE-0005734infCCDScomplement18000961800638Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.