Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005717 (pheT) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005717 showshow history
Names
pheT JW1703 ECK1711 b1713
Product
phenylalanine tRNA synthetase subunit beta
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1795557 1797944 2388 796
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000633
EnteroFam0005717: Trusted threshold=2239.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR005121 (IPR005121 Ferrodoxin-fold anticodon-binding domain) Apr 2008
Automated Process Approved IPR009061 (IPR009061 Putative DNA-binding domain superfamily) Apr 2008
Automated Process Approved IPR012340 (IPR012340 Nucleic acid-binding, OB-fold) Apr 2008
Automated Process Approved IPR005147 (IPR005147 tRNA synthetase, B5-domain) Apr 2008
Automated Process Approved IPR002547 (IPR002547 tRNA-binding domain) Apr 2008
Automated Process Approved IPR005146 (IPR005146 B3/B4 tRNA-binding domain) Apr 2008
Automated Process Approved IPR004532 (IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit) Apr 2008
Automated Process Approved IPR036690 (IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily) Jul 2018
Automated Process Approved PF03147 (PF03147 Ferredoxin-fold anticodon binding domain) Jul 2018
Automated Process Approved PF03484 (PF03484 tRNA synthetase B5 domain) Jul 2018
Automated Process Approved PF01588 (PF01588 Putative tRNA binding domain) Jul 2018
Automated Process Approved PF03483 (PF03483 B3/4 domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006432 phenylalanyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003723 RNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005147, IPR005146
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005147, IPR004532
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004826 phenylalanine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000049 tRNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pheT Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1703 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1711 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1713 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product phenylalanine tRNA synthetase subunit beta Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name phenylalanine tRNA synthetase, beta-subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005717: Trusted threshold=2239.6; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000633
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF03484 tRNA synthetase B5 domain Protein Sequence Similarity - PFAM Model Name: PF03484
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR009061 Putative DNA-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR009061
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005121 Ferrodoxin-fold anticodon-binding domain Protein Sequence Similarity - InterPro Domain: IPR005121
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03483 B3/4 domain Protein Sequence Similarity - PFAM Model Name: PF03483
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF01588 Putative tRNA binding domain Protein Sequence Similarity - PFAM Model Name: PF01588
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036690
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF03147 Ferredoxin-fold anticodon binding domain Protein Sequence Similarity - PFAM Model Name: PF03147
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012340 Nucleic acid-binding, OB-fold Protein Sequence Similarity - InterPro Domain: IPR012340
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit Protein Sequence Similarity - InterPro Domain: IPR004532
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005146 B3/B4 tRNA-binding domain Protein Sequence Similarity - InterPro Domain: IPR005146
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR005147 tRNA synthetase, B5-domain Protein Sequence Similarity - InterPro Domain: IPR005147
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002547 tRNA-binding domain Protein Sequence Similarity - InterPro Domain: IPR002547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 6.1.1.20 Published Annotation - Swiss-Prot Accession Number: P07395 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:945382 Published Annotation - Entrez Gene Database ID: 945382
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P07395 Published Annotation - Swiss-Prot Accession Number: P07395 Jan 2005
Automated Process Approved db xref GI:1788006 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P07395 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10710 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005717 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of pheS ASAP:5722:(interacting residues not known); by MALDI-TOF and LC-MS Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note phenylalanine tRNA synthetase, beta-subunit; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74783.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006432 phenylalanyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0003723 RNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005147, IPR005146
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR005147, IPR004532
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004826 phenylalanine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004532
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0000049 tRNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002547
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000633 pheT CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001155 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000219 pheT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000155 pheT CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000334 pheT CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000260 pheT CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001170 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002181 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129400 pheT CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104850 pheT CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104237 pheT CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001761 pheT CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002345 pheT CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002053 pheT CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002648 pheT CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006716 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020108 pheT CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002132 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002317 pheT CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301200 pheT CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001817 pheT CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001900 pheT CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004269 pheT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007762 pheT CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001673 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010289 pheT CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001627 pheT CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002674 pheT CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007618 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008119 pheT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008145 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0081884 pheT CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001925 pheT CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002247 pheT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007358 pheT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009157 pheT CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001962 pheT CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006369 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006225 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005814 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010118 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008678 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007583 pheT CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007271 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007627 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010836 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008655 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009908 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007798 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007814 pheT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008423 pheT CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026502 pheT CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006750 pheT CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006469 pheT CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001610 pheT CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001758 pheT CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002359 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002074 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002193 CDS
Person Uncurated Go view Escherichia coli Nissle 1917 AML-0001918 pheT pseudogene
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176077 pheT CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001913 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001476 pheT CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132403 pheT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004159 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001913 pheT CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002093 pheT CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002805 pheT CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002181 pheT CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004244 pheT CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006805 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001060 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004039 pheT CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001071 pheT CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003061 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001758 pheT CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002464 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009405 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002477 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289787 pheT CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004902 pheT CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062682 pheT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001353 pheT CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001811 pheT CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003284 pheT CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006744 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142950 pheT CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002427 pheT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006009 pheT CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001701 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001583 pheT CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006276 pheT CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005572 pheT CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005389 pheT CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008216 pheT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005830 pheT CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004806 pheT CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004846 pheT CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007819 pheT CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004933 pheT CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005816 pheT CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004974 pheT CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001515 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001505 pheT CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002011 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006058 pheT CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006925 pheT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005521 pheT CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008687 pheT CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108614 pheT CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082933 pheT CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001627 pheT CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094549 pheT CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008031 pheT CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008366 pheT CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008415 pheT CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003644 pheT CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265666 pheT CDS
Person Approved Go view Shigella boydii 227 ADV-0001528 pheT CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007366 pheT CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008135 pheT CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002089 pheT CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072717 pheT CDS
Person Approved Go view Shigella flexneri 301 ABT-0087834 pheT CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001605 pheT CDS
Person Approved Go view Shigella sonnei 046 ADD-0001568 pheT CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001292 VC1220 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000176 pheT CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003256 pheT CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000701 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005638 pheT CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000866 pheT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000198 pheT CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001686 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239587 pheT CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006735 pheT CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002142 pheT CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004918 pheT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001036 pheT CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123364 pheT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008296 pheT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007785 pheT CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008901 pheT CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006169 pheT CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031606 pheT CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008022 pheT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002267 pheT CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000856 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006940 pheT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005684 pheT CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002423 pheT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002874 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002148 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014497 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003590 pheT CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1790557 to 1802944
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005694selOCDScomplement17898081791244Downstream
ABE-0005696rflPCDScomplement17913071792020Downstream
ABE-0005704nlpCCDScomplement17922671792731Downstream
ABE-0005707btuDCDScomplement17928091793558Downstream
ABE-0005709btuECDScomplement17935581794109Downstream
ABE-0005712btuCCDScomplement17941721795152Downstream
ABE-0005715ihfACDScomplement17952531795552Downstream
ABE-0005717pheTCDScomplement17955571797944Matches
ABE-0005722pheSCDScomplement17979591798942Upstream
ABE-0005727pheMCDScomplement17992261799270Upstream
ABE-0005729rplTCDScomplement17993931799749Upstream
ABE-0005732rpmICDScomplement17998021799999Upstream
ABE-0005734infCCDScomplement18000961800638Upstream
ABE-0005736thrSCDScomplement18006421802570Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.