Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005722 (pheS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005722 showshow history
Names
pheS JW5277 ECK1712 phe-act b1714
Product
phenylalanine tRNA synthetase subunit alpha
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1797959 1798942 984 328
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000634
EnteroFam0005722: Trusted threshold=991.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR010978 (IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm) Apr 2008
Automated Process Approved IPR004188 (IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal) Apr 2008
Automated Process Approved IPR002319 (IPR002319 Phenylalanyl-tRNA synthetase) Apr 2008
Automated Process Approved IPR004529 (IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit) Apr 2008
Automated Process Approved IPR006195 (IPR006195 Aminoacyl-tRNA synthetase, class II) Apr 2008
Automated Process Approved IPR022911 (IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial) Jul 2018
Automated Process Approved PF01409 (PF01409 tRNA synthetases class II core domain (F)) Jul 2018
Automated Process Approved PF02912 (PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0043039 tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002319
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006432 phenylalanyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004188
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004529
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004188, IPR004529, IPR010978
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000049 tRNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002319
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004188
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004826 phenylalanine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004188
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name pheS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym phe-act Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK1712 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW5277 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1714 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product phenylalanine tRNA synthetase subunit alpha Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Approved alternate product name phenylalanine tRNA synthetase, alpha-subunit Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005722: Trusted threshold=991.7; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000634
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal Protein Sequence Similarity - InterPro Domain: IPR004188
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF01409 tRNA synthetases class II core domain (F) Protein Sequence Similarity - PFAM Model Name: PF01409
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006195 Aminoacyl-tRNA synthetase, class II Protein Sequence Similarity - InterPro Domain: IPR006195
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Protein Sequence Similarity - PFAM Model Name: PF02912
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial Protein Sequence Similarity - InterPro Domain: IPR022911
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit Protein Sequence Similarity - InterPro Domain: IPR004529
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm Protein Sequence Similarity - InterPro Domain: IPR010978
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002319 Phenylalanyl-tRNA synthetase Protein Sequence Similarity - InterPro Domain: IPR002319
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 6.1.1.- Published Annotation - Database Name: EC2GO: GO:0004812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 6.1.1.20 Published Annotation - Swiss-Prot Accession Number: P08312 Feb 2006
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005722 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10709 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P08312 Published Annotation - Swiss-Prot Accession Number: P08312 Jan 2005
Automated Process Approved db xref GeneID:946223 Published Annotation - Entrez Gene Database ID: 946223
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788007 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P08312 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Uncurated molecular interaction Interacts with the product of pheT ASAP:5717:(interacting residues not known); by MALDI-TOF Experimental - PubMed ID: 15690043
Reference: Escherichia coli K-12 W3110 		Mar 2005
Automated Process Approved note phenylalanine tRNA synthetase, alpha-subunit; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74784.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0043039 tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002319
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006432 phenylalanyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004188
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004529
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004826 phenylalanine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004188
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR004188, IPR004529, IPR010978
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0000049 tRNA binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002319
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006195
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004188
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000634 pheS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001156 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000154 pheS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000133 pheS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000335 pheS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000291 pheS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001169 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002182 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129399 pheS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104849 pheS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104236 pheS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001760 pheS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002346 pheS CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002052 pheS CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002647 pheS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006715 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020109 pheS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002133 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002316 pheS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301194 pheS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001816 pheS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001901 pheS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004270 pheS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007763 pheS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001674 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010290 pheS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001628 pheS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002673 pheS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007617 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008120 pheS CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008144 pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078230 pheS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001926 pheS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002248 pheS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007357 pheS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009158 pheS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001963 pheS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006370 pheS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006226 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005815 pheS CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010119 pheS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008679 pheS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007582 pheS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007272 pheS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007626 pheS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010835 pheS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008656 pheS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009909 pheS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007797 pheS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007813 pheS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008424 pheS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026503 pheS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006749 pheS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006470 pheS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002118 pheS CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001611 pheS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001759 pheS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002358 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002075 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002192 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001919 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176078 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001914 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001475 pheS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132404 pheS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004158 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001914 pheS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002094 pheS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002804 pheS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002182 pheS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004243 pheS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006806 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001059 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004040 pheS CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001070 pheS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003062 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001757 pheS CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002465 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009404 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002476 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289786 pheS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004901 pheS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062683 pheS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001352 pheS CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001812 pheS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003285 pheS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006743 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142954 pheS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002426 pheS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006010 pheS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001702 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001582 pheS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006277 pheS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005578 pheS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005395 pheS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008217 pheS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005829 pheS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004805 pheS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004845 pheS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007818 pheS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004932 pheS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005815 pheS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004975 pheS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001516 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001506 pheS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002012 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006057 pheS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006926 pheS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005520 pheS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008688 pheS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108617 pheS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082932 pheS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001626 pheS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094546 pheS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008032 pheS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008365 pheS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008414 pheS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003645 pheS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265665 pheS CDS
Person Approved Go view Shigella boydii 227 ADV-0001527 pheS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007367 pheS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008134 pheS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002090 pheS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072716 pheS CDS
Person Approved Go view Shigella flexneri 301 ABT-0087833 pheS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001604 pheS CDS
Person Approved Go view Shigella sonnei 046 ADD-0001567 pheS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001291 VC1219 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000177 pheS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003254 pheS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000700 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005633 pheS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000865 pheS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000197 pheS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001685 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239589 pheS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006736 pheS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002143 pheS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004919 pheS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001035 pheS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123369 pheS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008295 pheS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007786 pheS CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0004139 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008902 pheS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006170 pheS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031605 pheS CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008021 pheS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002268 pheS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000855 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006939 pheS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005683 pheS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002424 pheS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002875 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002147 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014509 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003589 pheS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1792959 to 1803942
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005707btuDCDScomplement17928091793558Downstream
ABE-0005709btuECDScomplement17935581794109Downstream
ABE-0005712btuCCDScomplement17941721795152Downstream
ABE-0005715ihfACDScomplement17952531795552Downstream
ABE-0005717pheTCDScomplement17955571797944Downstream
ABE-0005722pheSCDScomplement17979591798942Matches
ABE-0005727pheMCDScomplement17992261799270Upstream
ABE-0005729rplTCDScomplement17993931799749Upstream
ABE-0005732rpmICDScomplement17998021799999Upstream
ABE-0005734infCCDScomplement18000961800638Upstream
ABE-0005736thrSCDScomplement18006421802570Upstream
ABE-0005740arpB_1CDSpforward18030941803567Upstream
ABE-0285095arpBpseudogeneforward18030941804993Upstream
ABE-0005742arpB_2CDSpforward18035781804993Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.