Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005736 (thrS) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005736 showshow history
Names
thrS JW1709 ECK1717 b1719
Product
threonyl-tRNA synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1800642 1802570 1929 643
Sequence

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000638
EnteroFam0005736: Trusted threshold=1989.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR002320 (IPR002320 Threonine-tRNA ligase, class IIa) Apr 2008
Automated Process Approved IPR004154 (IPR004154 Anticodon-binding) Apr 2008
Automated Process Approved IPR012676 (IPR012676 TGS-like) Apr 2008
Automated Process Approved IPR012675 (IPR012675 Beta-grasp domain superfamily) Apr 2008
Automated Process Approved IPR004095 (IPR004095 TGS) Apr 2008
Automated Process Approved IPR012947 (IPR012947 Threonyl/alanyl tRNA synthetase, SAD) Apr 2008
Automated Process Approved IPR002314 (IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)) Apr 2008
Automated Process Approved IPR006195 (IPR006195 Aminoacyl-tRNA synthetase, class II) Apr 2008
Automated Process Approved IPR018163 (IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily) Jul 2018
Automated Process Approved PF02824 (PF02824 TGS domain) Jul 2018
Automated Process Approved PF07973 (PF07973 Threonyl and Alanyl tRNA synthetase second additional domain) Jul 2018
Automated Process Approved PF00587 (PF00587 tRNA synthetase class II core domain (G, H, P, S and T)) Jul 2018
Automated Process Approved PF03129 (PF03129 Anticodon binding domain) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0043039 tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012947
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002314
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006435 threonyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002314, IPR018163
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004829 threonine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name thrS Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym JW1709 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1717 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1719 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product threonyl-tRNA synthetase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name threonine tRNA synthetase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005736: Trusted threshold=1989.9; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000638
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Protein Sequence Similarity - PFAM Model Name: PF07973
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR004154 Anticodon-binding Protein Sequence Similarity - InterPro Domain: IPR004154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR002320 Threonine-tRNA ligase, class IIa Protein Sequence Similarity - InterPro Domain: IPR002320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF03129 Anticodon binding domain Protein Sequence Similarity - PFAM Model Name: PF03129
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Protein Sequence Similarity - PFAM Model Name: PF00587
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012676 TGS-like Protein Sequence Similarity - InterPro Domain: IPR012676
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily Protein Sequence Similarity - InterPro Domain: IPR018163
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02824 TGS domain Protein Sequence Similarity - PFAM Model Name: PF02824
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) Protein Sequence Similarity - InterPro Domain: IPR002314
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR006195 Aminoacyl-tRNA synthetase, class II Protein Sequence Similarity - InterPro Domain: IPR006195
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012947 Threonyl/alanyl tRNA synthetase, SAD Protein Sequence Similarity - InterPro Domain: IPR012947
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR012675 Beta-grasp domain superfamily Protein Sequence Similarity - InterPro Domain: IPR012675
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004095 TGS Protein Sequence Similarity - InterPro Domain: IPR004095
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 6.1.1.- Published Annotation - Database Name: EC2GO: GO:0004812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 6.1.1.3 Published Annotation - Swiss-Prot Accession Number: P0A8M3 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 2.3.1 (information transfer; protein related; amino acid -activation) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946222 Published Annotation - Entrez Gene Database ID: 946222
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P0A8M3 Published Annotation - Swiss-Prot Accession Number: P0A8M3 Jan 2006
Automated Process Approved db xref GI:1788013 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A8M3 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005736 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG11001 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Aminoacyl tRNA synthetases, tRNA modification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note threonine tRNA synthetase; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006418 - tRNA aminoacylation for protein translation Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74789.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 10.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model the E-matrix Experimental - PubMed ID: 19282977
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006412 translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002314
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Approved GO biological process GO:0006418 tRNA aminoacylation for protein translation Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006435 threonyl-tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0043039 tRNA aminoacylation GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR012947
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004812 aminoacyl-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004154
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR002314, IPR018163
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004829 threonine-tRNA ligase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002320
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000638 thrS CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0001160 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000183 thrS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000125 thrS CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000407 thrS CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000197 thrS CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0001165 CDS
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002186 CDS
Person Uncurated Go view Buchnera aphidicola APS ABZ-0129395 thrS CDS
Person Uncurated Go view Buchnera aphidicola Bp ABW-0104845 thrS CDS
Person Uncurated Go view Buchnera aphidicola Sg [T] ABV-0104232 thrS CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001756 thrS CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002350 thrS CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002047 thrS CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002642 thrS CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0006711 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0020114 thrS CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0002137 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002312 thrS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301177 thrS CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001812 thrS CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001905 thrS CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004274 thrS CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007768 thrS CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001678 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010294 thrS CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001631 thrS CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002669 thrS CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007613 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008124 thrS CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009537 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078235 thrS CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001930 thrS CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002252 thrS CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007353 thrS CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009678 thrS CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001968 thrS CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006374 thrS CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006230 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010124 thrS CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008684 thrS CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007577 thrS CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007277 thrS CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007621 thrS CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010830 thrS CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008661 thrS CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009914 thrS CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007792 thrS CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007808 thrS CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008429 thrS CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026508 thrS CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006745 thrS CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006476 thrS CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002123 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001615 thrS CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001764 thrS CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002353 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002080 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002187 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001924 thrS CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176082 thrS CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001918 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001471 thrS CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132409 thrS CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004153 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001919 thrS CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0002098 thrS CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002799 thrS CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0002186 thrS CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004239 thrS CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006810 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001055 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004044 thrS CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001066 thrS CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003066 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001753 thrS CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002469 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009400 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002472 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289781 thrS CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004897 thrS CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062687 thrS CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001347 thrS CDS
Person Approved Go view Pectobacterium carotovorum WPP14 ADT-0001816 thrS CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003289 thrS CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006739 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142963 thrS CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0002422 thrS CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006014 thrS CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001707 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001578 thrS CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006281 thrS CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005593 thrS CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005410 thrS CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008221 thrS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005825 thrS CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008051 thrS CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004841 thrS CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007590 thrS CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004928 thrS CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005811 thrS CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004979 thrS CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001520 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001511 thrS CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002017 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006053 thrS CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007489 thrS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005516 thrS CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008180 thrS CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108631 thrS CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082927 thrS CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001621 thrS CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094534 thrS CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008036 thrS CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008169 thrS CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006139 thrS CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003649 thrS CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0265882 thrS CDS
Person Approved Go view Shigella boydii 227 ADV-0001523 thrS CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007372 thrS CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008130 thrS CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0002095 thrS CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072710 thrS CDS
Person Approved Go view Shigella flexneri 301 ABT-0087828 thrS CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001599 thrS CDS
Person Approved Go view Shigella sonnei 046 ADD-0001562 thrS CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0003176 VCA0287 CDS
Person Uncurated Go view Wigglesworthia morsitans AEQ-0000181 thrS CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0003246 thrS CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000696 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0005619 thrS CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000861 thrS CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000193 thrS CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001681 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239594 thrS CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006740 thrS CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002149 thrS CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004923 thrS CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001031 thrS CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123384 thrS CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008291 thrS CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007790 thrS CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008906 thrS CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006174 thrS CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031600 thrS CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002274 thrS CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000851 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006935 thrS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005679 thrS CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002429 thrS CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002879 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002143 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0014529 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0003585 thrS CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1795642 to 1807570
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005717pheTCDScomplement17955571797944Downstream
ABE-0005722pheSCDScomplement17979591798942Downstream
ABE-0005727pheMCDScomplement17992261799270Downstream
ABE-0005729rplTCDScomplement17993931799749Downstream
ABE-0005732rpmICDScomplement17998021799999Downstream
ABE-0005734infCCDScomplement18000961800638Downstream
ABE-0005736thrSCDScomplement18006421802570Matches
ABE-0005740arpB_1CDSpforward18030941803567Upstream
ABE-0285095arpBpseudogeneforward18030941804993Upstream
ABE-0005742arpB_2CDSpforward18035781804993Upstream
ABE-0285056yniDCDSforward18051651805272Upstream
ABE-0005744ydiYCDScomplement18053251806083Upstream
ABE-0005748pfkBCDSforward18063701807299Upstream
ABE-0005751ydiZCDSforward18074001807690Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.