Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005780 (katE) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005780 showshow history
Names
katE JW1721 ECK1730 b1732
Product
hydroperoxidase HPII(III) (catalase)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1813867 1816128 2262 754
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002226 (IPR002226 Catalase haem-binding site) Apr 2008
Automated Process Approved IPR010582 (IPR010582 Catalase immune-responsive domain) Apr 2008
Automated Process Approved IPR011614 (IPR011614 Catalase core domain) Apr 2008
Automated Process Approved IPR024712 (IPR024712 Catalase, mono-functional, haem-containing, clade 2) Jul 2018
Automated Process Approved IPR020835 (IPR020835 Catalase superfamily) Jul 2018
Automated Process Approved IPR029062 (IPR029062 Class I glutamine amidotransferase-like) Jul 2018
Automated Process Approved PF00199 (PF00199 Catalase) Jul 2018
Automated Process Approved PF06628 (PF06628 Catalase-related immune-responsive) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011614, IPR024712, IPR020835
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006979 response to oxidative stress GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010582
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010582
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004096 catalase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name katE Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym JW1721 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1730 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1732 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product hydroperoxidase HPII(III) (catalase) Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name catalase; hydroperoxidase HPII (III), RpoS-dependent Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name catalase; hydroperoxidase HPII(III) Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Automated Process Approved alternate product name catalase HPII, heme d-containing Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Protein Family
Automated Process Approved protein family IPR002226 Catalase haem-binding site Protein Sequence Similarity - InterPro Domain: IPR002226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00199 Catalase Protein Sequence Similarity - PFAM Model Name: PF00199
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF06628 Catalase-related immune-responsive Protein Sequence Similarity - PFAM Model Name: PF06628
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR029062 Class I glutamine amidotransferase-like Protein Sequence Similarity - InterPro Domain: IPR029062
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR020835 Catalase superfamily Protein Sequence Similarity - InterPro Domain: IPR020835
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR010582 Catalase immune-responsive domain Protein Sequence Similarity - InterPro Domain: IPR010582
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011614 Catalase core domain Protein Sequence Similarity - InterPro Domain: IPR011614
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR024712 Catalase, mono-functional, haem-containing, clade 2 Protein Sequence Similarity - InterPro Domain: IPR024712
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 1.11.1.6 Published Annotation - Swiss-Prot Accession Number: P21179 Feb 2006
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 5.6.2 (cell processes; protection; detoxification (xenobiotic metabolism)) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10509 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946234 Published Annotation - Entrez Gene Database ID: 946234
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:48994891 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P21179 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005780 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P21179 Published Annotation - Swiss-Prot Accession Number: P21179 Jan 2005
Person Approved function enzyme; Detoxification Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note catalase; hydroperoxidase HPII(III); GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006805 - xenobiotic metabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAT48137.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated regulation expression regulated by acetate; expression is induced by acetate Experimental - PubMed ID: 11244055
Reference: Escherichia coli ATCC43888 (EHEC) 		Nov 2005
Person Approved sequence correction version m56: F198 to L Experimental - GenBank Accession Number: AG613223
Reference: Escherichia coli 		May 2004
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.97
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006979 response to oxidative stress GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0006118 (OBSOLETE) electron transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011614, IPR024712, IPR020835
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0006805 xenobiotic metabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010582
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0020037 heme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010582
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004096 catalase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002226
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002667 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001285 katE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000542 katE CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000131 katE CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000230 katE CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0000856 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001743 katE CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002035 katE CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002626 katE CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002300 katE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007782 katE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0001690 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010309 katE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001642 katE CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002658 katE CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007599 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008142 katE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009522 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078250 katE CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002270 catB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007336 katE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009693 katE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0001980 katE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0006390 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006244 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005834 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010137 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008697 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007564 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0007290 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007608 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010817 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008674 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009927 katE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007779 katE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007795 katE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008442 katE CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026520 katE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0006732 katE CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006488 katE CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001628 katE CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001779 katE CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002173 CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0001933 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0001458 katE CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132421 katE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004139 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0001932 katE CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0003895 katE CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001240 katE CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004226 katE CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001124 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0003975 katE CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001124 katE CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003007 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001816 katE CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002409 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0006922 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002538 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289331 katE CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004966 katE CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143867 katE CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0005341 katE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006027 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001563 katE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006295 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005631 katE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005447 katE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008234 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005811 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008037 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004827 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007577 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004915 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005799 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004992 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001535 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001526 katE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002034 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006039 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007503 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005503 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008167 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108657 katE CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082912 katE CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001602 katE CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094488 katE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008117 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008156 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006153 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006148 katE CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072691 katE CDS
Person Approved Go view Shigella flexneri 301 ABT-0087813 katE CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001583 katE CDS
Person Approved Go view Shigella sonnei 046 ADD-0001548 katE CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001657 VC1585 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003589 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004143 katA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000597 katA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003552 katA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003828 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005429 katA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001120 katA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005303 katA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002166 katA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006059 katA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004732 katA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002051 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007715 katA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005283 katA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005434 katA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003332 katA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002987 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006483 katA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006766 katA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001578 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003392 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1808867 to 1821128
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005757yniBCDScomplement18086971809233Upstream
ABE-0005761hxpBCDSforward18093801810048Upstream
ABE-0005768ydjMCDSforward18102111810801Upstream
ABE-0005771tcyPCDSforward18109341812325Upstream
ABE-0005773ydjOCDScomplement18123291813132Upstream
ABE-0005776cedACDScomplement18134211813663Upstream
ABE-0005780katECDSforward18138671816128Matches
ABE-0285464repeat_regionforward18161851816373Downstream
ABE-0005783chbGCDScomplement18163861817135Downstream
ABE-0005785chbFCDScomplement18171481818500Downstream
ABE-0005790chbRCDScomplement18186051819447Downstream
ABE-0005792chbACDScomplement18194551819805Downstream
ABE-0005795chbCCDScomplement18198561821214Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.