Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005783 (chbG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005783 showshow history
Names
chbG ydjC JW1722 ECK1731 celG b1733
Product
chitin disaccharide deacetylase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1816386 1817135 750 250
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006879 (IPR006879 Carbohydrate deacetylase YdjC-like) Apr 2008
Automated Process Approved IPR011330 (IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel) Jul 2018
Automated Process Approved PF04794 (PF04794 YdjC-like protein) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Uncurated GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name chbG Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym ECK1731 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1722 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym celG Published Annotation - Database Name: GenProtEC Jul 2002
Person Approved synonym ydjC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Person Approved locus tag b1733 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product chitin disaccharide deacetylase Published Annotation - EcoCyc Accession Number: EG12198
Reference: Escherichia coli K-12 MG1655 		Jan 2021
Automated Process Approved alternate product name chito-oligosaccharide deacetylase Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name conserved protein Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR006879 Carbohydrate deacetylase YdjC-like Protein Sequence Similarity - InterPro Domain: IPR006879
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel Protein Sequence Similarity - InterPro Domain: IPR011330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF04794 YdjC-like protein Protein Sequence Similarity - PFAM Model Name: PF04794
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Uncurated MultiFun 1.7.1 (metabolism; central intermediary metabolism; unassigned reversible reactions) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG12198 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P37794 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946231 Published Annotation - Entrez Gene Database ID: 946231
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P37794 Published Annotation - Swiss-Prot Accession Number: P37794 Jan 2005
Automated Process Approved db xref GI:1788028 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005783 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Degradation of small molecules: N,N'-diacetylchitobiose Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74803.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR011330
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0005405 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002321 chbG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002534 chbG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0003172 chbG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002554 chbG CDS
Ortholog
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002588 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002034 chbG CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002625 chbG CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002299 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004293 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007783 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001691 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010310 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001643 ydjC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002657 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007598 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008143 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009521 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078251 chbG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001947 CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002274 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007335 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009694 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001981 chbG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006391 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006245 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005835 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010138 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008698 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007563 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007291 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007607 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010816 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008675 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009928 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007778 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007794 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008443 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026521 chbG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006731 chbG CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006490 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002137 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001629 chbG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001780 chbG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002337 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002094 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002172 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001940 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001934 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001457 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132422 chbG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004138 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001933 ydjC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000161 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001239 ydjC CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004225 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006028 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001731 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001562 celG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006296 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005636 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005452 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008235 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005810 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008036 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004826 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007576 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004914 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005798 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004993 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001536 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001527 celG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002035 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006038 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007504 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005502 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008166 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108664 CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082910 CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001601 celG CDS
Person Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0094486 celG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008118 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008155 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006154 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0000235 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006147 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072690 ydjC CDS
Person Approved Go view Shigella flexneri 301 ABT-0087812 ydjC CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001582 ydjC CDS
Person Approved Go view Shigella sonnei 046 ADD-0001547 chbG CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001357 VC1285 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002050 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0002926 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003029 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001764 CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002103 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0240314 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007694 chbG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002900 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006471 chbG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000800 CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0124274 CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004458 chbG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005376 chbG CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002270 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009379 chbG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004751 chbG CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030925 CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007254 chbG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001415 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001900 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005294 chbG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005051 chbG CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003023 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003634 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001346 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012317 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004160 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20440mutantTn5 InsertionRequest the StrainABE-0005783chbGydjC::Tn5KAN-I-SceI at position 502 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1811386 to 1822135
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005771tcyPCDSforward18109341812325Downstream
ABE-0005773ydjOCDScomplement18123291813132Downstream
ABE-0005776cedACDScomplement18134211813663Downstream
ABE-0005780katECDSforward18138671816128Downstream
ABE-0285464repeat_regionforward18161851816373Downstream
ABE-0005783chbGCDScomplement18163861817135Matches
ABE-0005785chbFCDScomplement18171481818500Upstream
ABE-0005790chbRCDScomplement18186051819447Upstream
ABE-0005792chbACDScomplement18194551819805Upstream
ABE-0005795chbCCDScomplement18198561821214Upstream
ABE-0005797chbBCDScomplement18212991821619Upstream
ABE-0005799osmECDScomplement18219181822256Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.