Escherichia coli K-12 MG1655
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005785 (chbF) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005785 showshow history
Names
chbF ydjD JW1723 ECK1732 celF b1734
Product
monoacetylchitobiose-6-phosphate hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1817148 1818500 1353 451
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001088 (IPR001088 Glycoside hydrolase, family 4) Apr 2008
Automated Process Approved IPR001236 (IPR001236 Lactate/malate dehydrogenase, N-terminal) Apr 2008
Automated Process Approved IPR022616 (IPR022616 Glycosyl hydrolase, family 4, C-terminal) Jul 2018
Automated Process Approved IPR036291 (IPR036291 NAD(P)-binding domain superfamily) Jul 2018
Automated Process Approved IPR015955 (IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal) Jul 2018
Automated Process Approved PF02056 (PF02056 Family 4 glycosyl hydrolase) Jul 2018
Automated Process Approved PF11975 (PF11975 Family 4 glycosyl hydrolase C-terminal domain) Jul 2018
Automated Process Uncurated GH4 (GH4 Glycoside Hydrolase Family 4) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015955
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006100 (OBSOLETE) tricarboxylic acid cycle intermediate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001236
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001088
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015955
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015955
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001236
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001088
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name chbF Published Sequence Analysis - PubMed ID: 9729611 Aug 2003
Person Approved synonym ECK1732 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ydjD Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW1723 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym celF Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved locus tag b1734 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product monoacetylchitobiose-6-phosphate hydrolase Published Annotation - EcoCyc Accession Number: EG10144
Reference: Escherichia coli K-12 MG1655 		Oct 2021
Automated Process Approved alternate product name phospho-chitobiase; general 6-phospho-beta-glucosidase activity Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved alternate product name cryptic phospho-beta-glucosidase, NAD(P)-binding Published Annotation - PubMed ID: 16397293 Jan 2006
Protein Family
Automated Process Approved protein family IPR036291 NAD(P)-binding domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036291
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF02056 Family 4 glycosyl hydrolase Protein Sequence Similarity - PFAM Model Name: PF02056
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated protein family GH4 Glycoside Hydrolase Family 4 Protein Sequence Similarity - CAZy Model Name: GH4
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF11975 Family 4 glycosyl hydrolase C-terminal domain Protein Sequence Similarity - PFAM Model Name: PF11975
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR022616 Glycosyl hydrolase, family 4, C-terminal Protein Sequence Similarity - InterPro Domain: IPR022616
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001088 Glycoside hydrolase, family 4 Protein Sequence Similarity - InterPro Domain: IPR001088
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR001236 Lactate/malate dehydrogenase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001236
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015955
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Automated Process Uncurated EC number 3.2.1.- Published Annotation - Database Name: EC2GO: GO:0004553
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 3.2.1.86 Published Annotation - Swiss-Prot Accession Number: P17411 Feb 2006
Automated Process Uncurated EC number 1.1.1.- Published Annotation - Database Name: EC2GO: GO:0016616
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 1.1.1 (metabolism; carbon utilization; carbon compounds) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788029 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10144 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P17411 Published Annotation - Swiss-Prot Accession Number: P17411 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P17411 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946266 Published Annotation - Entrez Gene Database ID: 946266
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref ASAP:ABE-0005785 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved function enzyme; Degradation of small molecules: N,N'-diacetylchitobiose Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0016052 - carbohydrate catabolic process; GO_process: GO:0009435 - NAD biosynthetic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74804.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 8.96
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO biological process GO:0006100 (OBSOLETE) tricarboxylic acid cycle intermediate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001236
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015955
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0016052 carbohydrate catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001088
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO molecular function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015955
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015955
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001236
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001088
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003027 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002035 chbF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002075 chbF CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000087 chbF CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002101 chbF CDS
Ortholog
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001557 chbF CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002589 CDS
Automated Process Uncurated Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002033 chbF CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002624 chbF_2 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002298 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007784 chbF CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001692 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010311 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001644 celF CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002656 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007597 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008144 chbF CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009520 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078252 chbF CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001948 chbF CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002275 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007334 chbF CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009695 chbF CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001982 chbF CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006392 chbF CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006246 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005836 chbF CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010139 chbF CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008699 chbF CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007562 chbF CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007292 chbF CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007606 chbF CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010815 chbF CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008676 chbF CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009929 chbF CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007777 chbF CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007793 chbF CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008444 chbF CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026522 chbF CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006730 chbF CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006491 chbF CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002138 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001630 chbF CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001781 chbF CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002336 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002095 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002171 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001941 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176097 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001935 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001456 chbF CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132423 chbF CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004137 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001934 celF CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0000162 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0000610 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001238 celF CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004224 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143175 celF CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006029 CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001561 celF CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006297 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005638 celF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005454 celF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008236 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005809 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008035 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004825 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007575 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004913 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005797 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0004994 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001537 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001528 celF CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002036 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006037 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007505 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005501 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008165 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108665 celF CDS
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082909 celF CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001600 celF CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094483 celF CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008119 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008154 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006155 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006146 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072689 celF CDS
Person Approved Go view Shigella flexneri 301 ABT-0087811 celF CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001581 celF CDS
Person Approved Go view Shigella sonnei 046 ADD-0001546 chbF CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001356 VC1284 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001484 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011420 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001085 chbF CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001927 chbF CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000994 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003944 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007371 celF CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003133 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008255 celF CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003371 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005376 celF CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006827 celF CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004969 celF CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004672 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004465 celF CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007987 celF CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003853 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004673 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000288 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012309 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004161 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20441mutantTn5 InsertionRequest the StrainABE-0005785chbFcelF::Tn5KAN-2 at position 1164 in Minus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1812148 to 1823500
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005771tcyPCDSforward18109341812325Downstream
ABE-0005773ydjOCDScomplement18123291813132Downstream
ABE-0005776cedACDScomplement18134211813663Downstream
ABE-0005780katECDSforward18138671816128Downstream
ABE-0285464repeat_regionforward18161851816373Downstream
ABE-0005783chbGCDScomplement18163861817135Downstream
ABE-0005785chbFCDScomplement18171481818500Matches
ABE-0005790chbRCDScomplement18186051819447Upstream
ABE-0005792chbACDScomplement18194551819805Upstream
ABE-0005795chbCCDScomplement18198561821214Upstream
ABE-0005797chbBCDScomplement18212991821619Upstream
ABE-0005799osmECDScomplement18219181822256Upstream
ABE-0005803nadECDSforward18224581823285Upstream
ABE-0285465repeat_regionforward18233311823428Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.