Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005820 (astD) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005820 showshow history
Names
astD ydjU JW5282 ECK1744 b1746
Product
succinylglutamic semialdehyde dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1828256 1829734 1479 493
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012303 (IPR012303 (DEPRECATED) NAD-dependent aldehyde dehydrogenase) Apr 2008
Automated Process Approved IPR015590 (IPR015590 Aldehyde dehydrogenase domain) Apr 2008
Automated Process Approved IPR017649 (IPR017649 Succinylglutamate-semialdehyde dehydrogenase) Jul 2018
Automated Process Approved IPR016161 (IPR016161 Aldehyde/histidinol dehydrogenase) Jul 2018
Automated Process Approved PF00171 (PF00171 Aldehyde dehydrogenase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR017649, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0006527 arginine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017649
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0043824 succinylglutamate-semialdehyde dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017649
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name astD Published Annotation - Swiss-Prot Accession Number: P76217 Aug 2002
Person Approved synonym JW5282 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym ydjU Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym ECK1744 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1746 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product succinylglutamic semialdehyde dehydrogenase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name succinylglutamic semialdehyde dehydrogenase Published Annotation - Swiss-Prot Accession Number: P76217 Jan 2006
Protein Family
Automated Process Approved protein family IPR015590 Aldehyde dehydrogenase domain Protein Sequence Similarity - InterPro Domain: IPR015590
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR016161 Aldehyde/histidinol dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00171 Aldehyde dehydrogenase family Protein Sequence Similarity - PFAM Model Name: PF00171
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR017649 Succinylglutamate-semialdehyde dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR017649
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR012303 (DEPRECATED) NAD-dependent aldehyde dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR012303
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Automated Process Uncurated EC number 1.-.-.- Published Annotation - Database Name: EC2GO: GO:0016491
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Approved EC number 1.2.1.- Published Annotation - Swiss-Prot Accession Number: P76217 Feb 2006
Automated Process Uncurated EC number 1.2.1.71 Published Annotation - Database Name: EC2GO: GO:0043824
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13997 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P76217 Published Annotation - Swiss-Prot Accession Number: P76217 Jan 2005
Automated Process Approved db xref GI:1788042 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P76217 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005820 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946260 Published Annotation - Entrez Gene Database ID: 946260
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved function enzyme; Not classified Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved note GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74816.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Uncurated GO biological process GO:0006527 arginine catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017649
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO biological process GO:0055114 (OBSOLETE) oxidation-reduction process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR017649, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Uncurated GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR015590, IPR016161
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Uncurated GO molecular function GO:0043824 succinylglutamate-semialdehyde dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017649
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0003885 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002098 astD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002118 astD CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0001187 astD CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0002128 astD CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002218 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001728 astD CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002397 astD CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002021 astD CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002612 astD CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002286 astD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0301131 astD CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0001793 astD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001921 astD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004309 astD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007796 astD CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001704 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010323 astD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0001656 thrL CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002644 astD CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007582 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008156 astD CDS
Person Uncurated Go view Escherichia coli B7A (ETEC) ADK-0010781 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078265 astD CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001960 astD CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002287 astD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007322 astD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009707 astD CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001994 astD CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006405 astD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006259 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005848 astD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010151 astD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008711 astD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007550 astD CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007304 astD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007594 astD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010803 astD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008688 astD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009941 astD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007763 astD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007781 astD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008456 astD CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026534 astD CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006718 astD CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006504 astD CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002152 astD CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001642 astD CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001793 astD CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002323 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002158 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001953 astD CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176111 astD CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001947 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001444 astD CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132435 astD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004122 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001948 CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001921 astD CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001227 astD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004211 astD CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004916 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001036 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004063 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001049 astD CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003084 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001735 astD CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002487 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009379 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002452 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0289763 astD CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004878 astD CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0143958 astD CDS
Person Uncurated Go view Pseudomonas syringae pv. tomato DC3000 ADG-0001869 astD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006042 astD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001744 CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006310 astD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005670 astD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005486 astD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008249 astD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005796 astD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008022 astD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004812 astD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007562 astD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004900 astD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005784 astD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005007 astD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001548 CDS
Person Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001539 astD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002050 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006025 astD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007517 astD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005488 astD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008152 astD CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108683 astD pseudogene
Person Uncurated Go view Salmonella Typhi Ty2 ABS-0082898 astD CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001586 astD CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094449 astD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008131 astD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008142 astD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006167 astD CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002922 astD CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0264174 astD CDS
Person Approved Go view Shigella boydii 227 ADV-0001487 CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007404 astD CDS
Person Uncurated Go view Shigella dysenteriae 197 ADU-0001766 CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0072673 CDS
Person Uncurated Go view Shigella flexneri 301 ABT-0087799 CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0001569 CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002715 VC2616 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000370 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007077 astD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000783 astD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000293 astD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000109 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238402 astD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006631 astD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001633 astD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004448 astD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001465 astD CDS
Person Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121835 astD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005384 astD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000604 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009134 astD CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032066 astD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006027 astD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001381 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007218 astD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006092 astD CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002041 astD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002386 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002639 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012262 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004173 astD CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21963mutantTn5 InsertionRequest the StrainABE-0005820astDb1746::Tn5KAN-2 at position 520 in Plus orientation ,+ pKD460Blattner Laboratory
FB22935mutantTn5 InsertionRequest the StrainABE-0005820astDb1746::Tn5(KAN-2) at position 520 in Plus orientation ,+ pKD46 0Blattner Laboratory
FB23507mutantTn5 InsertionRequest the StrainABE-0005820astDb1746::Tn5KAN-2 at position 520 in Plus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1823256 to 1834734
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005803nadECDSforward18224581823285Downstream
ABE-0285465repeat_regionforward18233311823428Downstream
ABE-0005807choCDSforward18235151824402Downstream
ABE-0005809vesCDScomplement18243621824937Downstream
ABE-0005812spyCDScomplement18251401825625Downstream
ABE-0005815astECDScomplement18259551826923Downstream
ABE-0005817astBCDScomplement18269161828259Overlaps Downstream
ABE-0005820astDCDScomplement18282561829734Matches
ABE-0005822astACDScomplement18297311830765Overlaps Upstream
ABE-0005824astCCDScomplement18307621831982Upstream
ABE-0005829xthACDSforward18324281833234Upstream
ABE-0005832ydjXCDSforward18334011834111Upstream
ABE-0005834ydjYCDSforward18341161834793Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.