Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005824 (astC) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005824 showshow history
Names
astC argM ydjW JW1737 ECK1746 cstC b1748
Product
succinylornithine transaminase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1830762 1831982 1221 407
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005814 (IPR005814 Aminotransferase class-III) Apr 2008
Automated Process Approved IPR015424 (IPR015424 Pyridoxal phosphate-dependent transferase) Apr 2008
Automated Process Approved IPR015421 (IPR015421 Pyridoxal phosphate-dependent transferase, major domain) Apr 2008
Automated Process Approved IPR004636 (IPR004636 Acetylornithine/Succinylornithine transaminase family) Apr 2008
Automated Process Approved IPR017652 (IPR017652 Acetyl/Succinylornithine transaminase family, bacteria) Jul 2018
Automated Process Approved PF00202 (PF00202 Aminotransferase class-III) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017652
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO biological process GO:0006525 arginine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004636
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name astC Published Annotation - Swiss-Prot Accession Number: P77581 Aug 2002
Person Approved synonym cstC Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Person Approved synonym ECK1746 Published Annotation - PubMed ID: 16397293 Jan 2006
Automated Process Approved synonym argM Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved synonym ydjW Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved synonym JW1737 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1748 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product succinylornithine transaminase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Oct 2021
Person Uncurated alternate product name succinylornithine transaminase, also has acetylornitine transaminase activity, PLP-dependent Published Annotation - Database Name: GenProtEC Jan 2006
Person Approved alternate product name acetylornithine delta-aminotransferase Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Automated Process Approved protein family IPR005814 Aminotransferase class-III Protein Sequence Similarity - InterPro Domain: IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015421 Pyridoxal phosphate-dependent transferase, major domain Protein Sequence Similarity - InterPro Domain: IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR015424 Pyridoxal phosphate-dependent transferase Protein Sequence Similarity - InterPro Domain: IPR015424
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR004636 Acetylornithine/Succinylornithine transaminase family Protein Sequence Similarity - InterPro Domain: IPR004636
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR017652 Acetyl/Succinylornithine transaminase family, bacteria Protein Sequence Similarity - InterPro Domain: IPR017652
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00202 Aminotransferase class-III Protein Sequence Similarity - PFAM Model Name: PF00202
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 2.6.1.- Published Annotation - Swiss-Prot Accession Number: P77581 Feb 2006
Automated Process Approved EC number 2.6.1.17 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13999 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005824 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946255 Published Annotation - Entrez Gene Database ID: 946255
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P77581 Published Annotation - Swiss-Prot Accession Number: P77581 Jan 2005
Automated Process Approved db xref GI:1788044 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77581 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Amino acid biosynthesis: Arginine Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note acetylornithine delta-aminotransferase; GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74818.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006525 arginine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004636
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: InterPro2GO: IPR017652
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved GO molecular function GO:0030170 pyridoxal phosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015421
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved GO molecular function GO:0008483 transaminase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005814
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0000053 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002202 astC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002280 astC CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000027 astC CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000025 astC CDS
Ortholog
Automated Process Uncurated Go view Brenneria sp. EniD312 AKG-0002220 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001726 astC CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002399 astC CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002019 astC CDS
Automated Process Approved Go view Citrobacter freundii ATCC 8090 [T] AVI-0002610 astC CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002284 astC CDS
Automated Process Approved Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001923 argM CDS
Automated Process Approved Go view Escherichia coli 101-1 (EAEC) BAB-0007798 astC CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001706 CDS
Automated Process Approved Go view Escherichia coli 53638 (EIEC) ADP-0010325 argM CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001658 cstC CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002642 astC CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007580 CDS
Automated Process Approved Go view Escherichia coli B171 (EPEC) ADN-0008158 astC CDS
Automated Process Approved Go view Escherichia coli B7A (ETEC) ADK-0009558 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078267 astC CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001962 astC CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002289 CDS
Automated Process Approved Go view Escherichia coli E110019 (EPEC) ADM-0007320 astC CDS
Automated Process Approved Go view Escherichia coli E22 (EPEC) ADL-0009709 astC CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0001996 astC CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006407 astC CDS
Automated Process Approved Go view Escherichia coli EC4024 (EHEC) BBI-0006261 CDS
Automated Process Approved Go view Escherichia coli EC4042 (EHEC) BBA-0005850 astC CDS
Automated Process Approved Go view Escherichia coli EC4045 (EHEC) BBB-0010153 astC CDS
Automated Process Approved Go view Escherichia coli EC4076 (EHEC) BAZ-0008713 astC CDS
Automated Process Approved Go view Escherichia coli EC4113 (EHEC) BAY-0007548 astC CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007306 astC CDS
Automated Process Approved Go view Escherichia coli EC4196 (EHEC) BAX-0007592 astC CDS
Automated Process Approved Go view Escherichia coli EC4206 (EHEC) BAW-0010801 astC CDS
Automated Process Approved Go view Escherichia coli EC4401 (EHEC) BAV-0008690 astC CDS
Automated Process Approved Go view Escherichia coli EC4486 (EHEC) BAU-0009943 astC CDS
Automated Process Approved Go view Escherichia coli EC4501 (EHEC) BAT-0007761 astC CDS
Automated Process Approved Go view Escherichia coli EC508 (EHEC) BBJ-0007779 astC CDS
Automated Process Approved Go view Escherichia coli EC869 (EHEC) BBC-0008458 astC CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026536 astC CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006716 astC CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006506 astC CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002154 CDS
Person Approved Go view Escherichia coli K-12 DH10B AEC-0001644 astC CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001795 astC CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002321 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002109 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002156 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001955 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176115 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001949 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001442 astC CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132437 astC CDS
Automated Process Approved Go view Escherichia coli TW14588 (EHEC) BBK-0004120 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001950 astC CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001923 astC CDS
Person Approved Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001225 argD CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004209 astC CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0004914 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001034 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0004065 CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001047 argM CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0003086 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0001733 argM CDS
Automated Process Approved Go view Pantoea ananatis PA13 APK-0002489 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009377 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0002450 CDS
Automated Process Uncurated Go view Pantoea stewartii DC283 ACV-0289761 astC CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0004876 astC CDS
Automated Process Approved Go view Salmonella Agona SL483 BBX-0006044 astC CDS
Automated Process Approved Go view Salmonella Arizonae CDC 346-86 BCD-0001746 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001550 astC CDS
Automated Process Approved Go view Salmonella Dublin CT_02021853 BCB-0006312 CDS
Automated Process Approved Go view Salmonella Enteritidis P125109 BCF-0005676 astC CDS
Automated Process Approved Go view Salmonella Gallinarum 287/91 BCG-0005492 astC CDS
Automated Process Approved Go view Salmonella Hadar RI_05P066 BBT-0008251 CDS
Automated Process Approved Go view Salmonella Heidelberg SL476 BBV-0005794 astC CDS
Automated Process Approved Go view Salmonella Heidelberg SL486 BBW-0008020 astC CDS
Automated Process Approved Go view Salmonella Javiana GA_MM04042433 BCA-0004810 CDS
Automated Process Approved Go view Salmonella Kentucky CDC 191 BBZ-0007560 astC CDS
Automated Process Approved Go view Salmonella Kentucky CVM29188 BBP-0004898 astC CDS
Automated Process Approved Go view Salmonella Newport SL254 BBQ-0005782 CDS
Automated Process Approved Go view Salmonella Newport SL317 BBR-0005009 astC CDS
Automated Process Approved Go view Salmonella Paratyphi A AKU_12601 BCH-0001550 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001541 astC CDS
Automated Process Approved Go view Salmonella Paratyphi B SPB7 BCC-0002052 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA23 BBN-0006023 CDS
Automated Process Approved Go view Salmonella Saintpaul SARA29 BBM-0007519 CDS
Automated Process Approved Go view Salmonella Schwarzengrund CVM19633 BBO-0005486 CDS
Automated Process Approved Go view Salmonella Schwarzengrund SL480 BBY-0008150 CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108688 astC CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082896 astC CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001584 argD_1 CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094443 astC CDS
Automated Process Approved Go view Salmonella Virchow SL491 BBS-0008133 CDS
Automated Process Approved Go view Salmonella Weltevreden SL484 BBU-0008140 astC CDS
Automated Process Approved Go view Salmonella enterica CVM23701 BBL-0006169 CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0002920 astC CDS
Person Approved Go view Shigella boydii 227 ADV-0001485 astC CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007406 astC CDS
Automated Process Approved Go view Shigella dysenteriae 1012 BAA-0006128 astC CDS
Person Uncurated Go view Shigella flexneri 2457T ABQ-0072671 astC pseudogene
Person Approved Go view Shigella flexneri 301 ABT-0087798 astC pseudogene
Person Approved Go view Shigella sonnei 046 ADD-0001530 astC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000372 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0007082 argM CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000781 astC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000295 astC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000107 CDS
Person Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238399 astC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006633 argM CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001631 astC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004446 argM CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001467 astC CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0121831 astC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005382 argM CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000606 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009136 argM CDS
Person Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032068 astC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006029 argM CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001383 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007220 argM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006094 argM CDS
Person Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002039 astC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002384 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002641 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012254 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004175 astC CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB21965mutantTn5 InsertionRequest the StrainABE-0005824astCcstC::Tn5KAN-2 at position 594 in Plus orientation ,+ pKD460Blattner Laboratory
FB23509mutantTn5 InsertionRequest the StrainABE-0005824astCcstC::Tn5KAN-2 at position 594 in Plus orientation ,- pKD46 RESEQD By acciden5Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1825762 to 1836982
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005815astECDScomplement18259551826923Downstream
ABE-0005817astBCDScomplement18269161828259Downstream
ABE-0005820astDCDScomplement18282561829734Downstream
ABE-0005822astACDScomplement18297311830765Overlaps Downstream
ABE-0005824astCCDScomplement18307621831982Matches
ABE-0005829xthACDSforward18324281833234Upstream
ABE-0005832ydjXCDSforward18334011834111Upstream
ABE-0005834ydjYCDSforward18341161834793Upstream
ABE-0005837ydjZCDSforward18348081835515Upstream
ABE-0005839ynjACDSforward18355151836063Upstream
ABE-0005841ynjBCDSforward18360731837239Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.