Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005886 (ansA) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005886 showshow history
Names
ansA JW1756 ECK1765 b1767
Product
cytoplasmic L-asparaginase I
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1850860 1851876 1017 339
Sequence

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Context

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Protein Families to toptop
Author Approval Family Annotated
Person Approved ADX-0000646
EnteroFam0005886: Trusted threshold=952.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). 		Jan 2006
Automated Process Approved IPR006034 (IPR006034 Asparaginase/glutaminase-like) Apr 2008
Automated Process Approved IPR006033 (IPR006033 Type I L-asparaginase family) Apr 2008
Automated Process Approved IPR027474 (IPR027474 L-asparaginase, N-terminal) Jul 2018
Automated Process Approved IPR036152 (IPR036152 Asparaginase/glutaminase-like superfamily) Jul 2018
Automated Process Approved PF00710 (PF00710 Asparaginase, N-terminal) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006034
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO molecular function GO:0004067 asparaginase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006033
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Automated Process Approved name ansA Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 MG1655 		Sep 2007
Person Approved synonym ECK1765 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1756 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1767 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Approved product cytoplasmic L-asparaginase I Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved alternate product name cytoplasmic L-asparaginase I Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Jan 2006
Protein Family
Person Approved EnteroFam EnteroFam0005886: Trusted threshold=952.3; Members of this family are defined by searches with an hmm constructed from an alignment of putative orthologous proteins from eight genomes (E. coli MG1655, E. coli EDL933, S. enterica Typhimurium LT2, S. enterica Typhi CT18, Y. pestis CO92, Y. pseudotuberculosis 32953, E. chrysanthemi 3937 and E. carotovora atroseptica SCRI1043). Protein Sequence Similarity - ASAP FeatureID: ADX-0000646
Reference: EnteroFams 		Jan 2006
Automated Process Approved protein family IPR006033 Type I L-asparaginase family Protein Sequence Similarity - InterPro Domain: IPR006033
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family IPR027474 L-asparaginase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR027474
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR036152 Asparaginase/glutaminase-like superfamily Protein Sequence Similarity - InterPro Domain: IPR036152
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR006034 Asparaginase/glutaminase-like Protein Sequence Similarity - InterPro Domain: IPR006034
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Automated Process Approved protein family PF00710 Asparaginase, N-terminal Protein Sequence Similarity - PFAM Model Name: PF00710
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Other
Person Approved EC number 3.5.1.1 Published Annotation - Swiss-Prot Accession Number: P0A962 Feb 2006
Person Uncurated MultiFun 1.1.3 (metabolism; carbon utilization; amino acids) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Person Uncurated MultiFun 7.1 (location of gene products; cytoplasm) Published Annotation - MultiFun Database Name: MultiFun Feb 2002
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved db xref UniProtKB:P0A962 Published Annotation - Swiss-Prot Accession Number: P0A962 Jan 2006
Automated Process Approved db xref GeneID:946278 Published Annotation - Entrez Gene Database ID: 946278
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Automated Process Approved db xref GI:1788065 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref UniProtKB/Swiss-Prot:P0A962 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005886 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG10045 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Approved function enzyme; Degradation of small molecules: Amino acids Published Annotation - GenBank Accession Number: U00096
Reference: Escherichia coli MG1655 		Oct 1998
Automated Process Approved note GO_component: GO:0005737 - cytoplasm; GO_process: GO:0009063 - cellular amino acid catabolic process Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74837.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Cytoplasmic Predicted by PSORTb - PSORTb Final_Score: 9.26
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Person Uncurated subsystem component of in silico model iMC1010 Experimental - PubMed ID: 15129285
Reference: Escherichia coli K-12 MG1655 		Mar 2009
Person Uncurated subsystem component of in silico model iAF1260 Experimental - PubMed ID: 17593909
Reference: Escherichia coli K-12 MG1655 		Jan 2009
Person Uncurated subsystem component of in silico model iJR904 Experimental - PubMed ID: 12952533
Reference: Escherichia coli K-12 MG1655 		Feb 2009
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Person Uncurated GO biological process GO:0009063 cellular amino acid catabolic process Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Approved GO biological process GO:0006520 cellular amino acid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006034
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Person Uncurated GO cellular component GO:0005737 cytoplasm Ontology Mapping - Source and Dest Ontology: MultiFun to GO Mar 2004
Automated Process Uncurated GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - PubMed ID: 15501914
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved GO molecular function GO:0004067 asparaginase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006033
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Person Approved Go view EnteroFams ADX-0000646 ansA CDS
Automated Process Uncurated Go view OrthoMCL (14 enterobacteria) AMM-0002005 CDS
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001097 ansA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000942 ansA CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0000309 ansA CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0000721 ansA CDS
Ortholog
Automated Process Uncurated Go view Brenneria salicis ATCC 15712 [T] AMK-0002833 CDS
Automated Process Uncurated Go view Buttiauxella agrestis ATCC 33320 [T] APC-0001711 ansA CDS
Automated Process Uncurated Go view Cedecea davisae ATCC 33431 [T] ALZ-0002416 CDS
Automated Process Approved Go view Citrobacter amalonaticus ATCC 25405 [T] AUW-0002003 ansA CDS
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002593 ansA CDS
Automated Process Uncurated Go view Dickeya chrysanthemi Ech1591 AFK-0007022 CDS
Person Approved Go view Dickeya dadantii 3937 ABF-0046569 ansA CDS
Automated Process Uncurated Go view Dickeya parazeae Ech586 AGC-0001913 CDS
Automated Process Uncurated Go view Enterobacter cloacae subsp. cloacae ATCC 13047 [T] (AToL DRAFT) AMB-0002267 CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC 49946 ACW-0302144 ansA CDS
Automated Process Uncurated Go view Erwinia amylovora ATCC BAA-2158 APN-0002147 ansA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001623 ansA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004331 ansA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007818 ansA CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001727 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010346 ansA CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001676 ansA CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002624 CDS
Automated Process Approved Go view Escherichia coli ATCC 8739 AEM-0007556 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008178 ansA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009512 CDS
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078290 ansA CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001983 ansA CDS
Automated Process Uncurated Go view Escherichia coli DEC9A (UM-IGS draft) CFY-0002309 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007299 ansA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009730 ansA CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002014 ansA CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006428 ansA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006281 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005874 ansA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010175 ansA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008735 ansA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007526 ansA CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007328 ansA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007570 ansA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010779 ansA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008712 ansA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010156 ansA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007740 ansA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008788 ansA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008480 ansA CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026557 ansA CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006693 ansA CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006526 ansA CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002172 ansA CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001663 ansA CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001814 ansA CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002299 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002131 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002135 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001978 ansA CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001969 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001423 ansA CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132457 ansA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004097 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001970 ansA CDS
Automated Process Uncurated Go view Ewingella americana ATCC 33852 [T] AMA-0001767 CDS
Person Uncurated Go view Hafnia alvei ATCC 13337 [T] AMD-0002691 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0001207 ansA CDS
Automated Process Uncurated Go view Leclercia adecarboxylata ATCC 23216 [T] AME-0004193 CDS
Automated Process Uncurated Go view Musicola paradisiaca Ech703 AGA-0006716 CDS
Automated Process Uncurated Go view Pantoea agglomerans IG1 APM-0001482 CDS
Automated Process Uncurated Go view Pantoea agglomerans SL1-M5 ALY-0001453 ansA CDS
Automated Process Uncurated Go view Pantoea ananatis AJ13355 AOV-0001455 ansA CDS
Automated Process Uncurated Go view Pantoea ananatis B1-9 APL-0002622 CDS
Automated Process Uncurated Go view Pantoea ananatis LMG 20103 AKB-0002171 ansA CDS
Automated Process Uncurated Go view Pantoea ananatis PA13 APK-0002040 CDS
Automated Process Uncurated Go view Pantoea sp. At-9b AGM-0009947 CDS
Automated Process Uncurated Go view Pantoea sp. aB AJV-0001694 CDS
Automated Process Approved Go view Pantoea stewartii DC283 ACV-0286863 ansA CDS
Automated Process Uncurated Go view Pantoea vagans C9-1 ALK-0005310 ansA CDS
Person Approved Go view Pectobacterium atrosepticum SCRI1043 ABL-0062605 ansA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001410 ansA CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000607 ansA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002327 ansA CDS
Automated Process Uncurated Go view Pectobacterium sp. PC1 AFL-0006832 CDS
Person Uncurated Go view Photorhabdus luminescens subsp. laumondii TTO1 [T] ACD-0142699 ansA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0006055 ansA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0001756 CDS
Person Approved Go view Salmonella Choleraesuis SC-B67 ADB-0001540 ansA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006321 ansA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005707 ansA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005522 ansA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008261 ansA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005785 ansA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0008011 ansA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007549 ansA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004888 ansA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005772 ansA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0005018 ansA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001559 CDS
Person Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001550 ansA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002062 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0006013 ansA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007528 ansA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005476 ansA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008140 ansA CDS
Person Approved Go view Salmonella Typhi CT18 ABX-0108713 ansA CDS
Person Approved Go view Salmonella Typhi Ty2 ABS-0082887 ansA CDS
Automated Process Uncurated Go view Salmonella Typhimurium 14028S AJR-0001573 ansA CDS
Person Approved Go view Salmonella Typhimurium LT2 [T] ABU-0094419 ansA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008143 ansA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008131 ansA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006179 ansA CDS
Automated Process Uncurated Go view Serratia marcescens subsp. marcescens ATCC 13880 [T] AMF-0003054 CDS
Person Uncurated Go view Shewanella oneidensis MR-1 ACY-0266008 ansA CDS
Person Approved Go view Shigella boydii 227 ADV-0001461 ansA CDS
Automated Process Approved Go view Shigella boydii BS512 ADJ-0007433 ansA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006106 ansA CDS
Person Approved Go view Shigella dysenteriae 197 ADU-0001737 ansA CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072647 ansA CDS
Person Approved Go view Shigella flexneri 301 ABT-0087779 ansA CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001543 ansA CDS
Person Approved Go view Shigella sonnei 046 ADD-0001507 ansA CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0002070 VC1995 CDS
Person Uncurated Go view Xenorhabdus nematophila ATCC 19061 [T] ADW-0004465 ansA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003325 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006637 ansA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002695 ansA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002472 ansA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001709 CDS
Person Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0238990 ansA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006460 ansA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001837 ansA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004651 ansA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001288 ansA CDS
Person Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122370 ansA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005585 ansA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008010 ansA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001819 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008712 ansA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0007881 ansA CDS
Person Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031872 ansA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005821 ansA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001962 ansA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001161 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007612 ansA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005954 ansA CDS
Person Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0002169 ansA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002556 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002473 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012161 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004192 CDS
Molecular Interactions to toptop
Author Approval Feature Name Technique Evidence Comment Annotated
Person Approved ABE-0005886 ansA lambda repressor assay Doodle - bnumber: b1767 Oct 2003
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB20453mutantTn5 InsertionRequest the StrainABE-0005886ansAansA::Tn5KAN-2 at position 74 in Plus orientation ,+ pKD460Blattner Laboratory
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1845860 to 1856876
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005869topBCDScomplement18449991846960Upstream
ABE-0005872selDCDScomplement18469651848008Upstream
ABE-0005875ydjACDScomplement18481251848676Upstream
ABE-0005880sppACDSforward18488371850693Upstream
ABE-0005886ansACDSforward18508601851876Matches
ABE-0285734matS22protein_bindforward18511991851211Contained Within
ABE-0005891pncACDSforward18518871852528Downstream
ABE-0285467repeat_regionforward18525621852597Downstream
ABE-0005894ydjECDScomplement18526211853979Downstream
ABE-0005897ydjFCDScomplement18540961854854Downstream
ABE-0005901ydjGCDScomplement18549911855971Downstream
ABE-0005903ydjHCDScomplement18559811856928Downstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.