Escherichia coli K-12 MG1655
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Working With: Genome: Escherichia coli K-12 MG1655 Version: v3

ABE-0005901 (ydjG) - Escherichia coli K-12 MG1655 - Feature Annotation

ASAP ID
ABE-0005901 showshow history
Names
ydjG JW1760 ECK1769 b1771
Product
NADH-dependent methylglyoxal reductase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 1854991 1855971 981 327
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001395 (IPR001395 (DEPRECATED) Aldo/keto reductase) Apr 2008
Automated Process Approved IPR023210 (IPR023210 NADP-dependent oxidoreductase domain) Jul 2018
Automated Process Approved IPR036812 (IPR036812 NADP-dependent oxidoreductase domain superfamily) Jul 2018
Automated Process Approved PF00248 (PF00248 Aldo/keto reductase family) Jul 2018
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001395
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ydjG Published Annotation - Swiss-Prot Accession Number: P77256 Aug 2002
Person Approved synonym ECK1769 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved synonym JW1760 Published Annotation - PubMed ID: 16397293 Jan 2006
Person Approved locus tag b1771 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu May 2004
Product
Person Uncurated product NADH-dependent methylglyoxal reductase Published Annotation - EcoCyc Accession Number: G6958
Reference: Escherichia coli K-12 MG1655 		Jan 2021
Person Approved alternate product name predicted oxidoreductase Published Annotation - PubMed ID: 16397293 Jan 2006
Person Uncurated alternate product name putative oxidoreductase Published Annotation - Database Name: GenProtEC Jan 2006
Automated Process Approved alternate product name alpha-Keto reductase, NADH-dependent; can use methylglyoxal as substrate Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Person Uncurated alternate product name hypothetical oxidoreductase Published Annotation - Swiss-Prot Accession Number: P77256 Jan 2006
Protein Family
Automated Process Approved protein family IPR036812 NADP-dependent oxidoreductase domain superfamily Protein Sequence Similarity - InterPro Domain: IPR036812
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family PF00248 Aldo/keto reductase family Protein Sequence Similarity - PFAM Model Name: PF00248
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR023210 NADP-dependent oxidoreductase domain Protein Sequence Similarity - InterPro Domain: IPR023210
Reference: Escherichia coli K-12 MG1655 		Jul 2018
Automated Process Approved protein family IPR001395 (DEPRECATED) Aldo/keto reductase Protein Sequence Similarity - InterPro Domain: IPR001395
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Other
Person Approved EC number 1.-.-.- Published Annotation - Swiss-Prot Accession Number: P77256 Feb 2006
Automated Process Approved codon start 1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref ASAP:ABE-0005901 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GeneID:946283 Published Annotation - Entrez Gene Database ID: 946283
Reference: Escherichia coli K-12 MG1655 		Jun 2009
Person Approved db xref UniProtKB:P77256 Published Annotation - Swiss-Prot Accession Number: P77256 Jan 2005
Automated Process Approved db xref UniProtKB/Swiss-Prot:P77256 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref GI:1788070 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved db xref EcoGene:EG13483 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Approved protein id AAC74841.1 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Automated Process Uncurated subcellular localization Unknown Predicted by PSORTb - PSORTb Final_Score: 2.00
Reference: Escherichia coli K-12 MG1655 		Feb 2008
Automated Process Approved transl table 11 Published Annotation - GenBank Accession Number: U00096.3
Reference: Escherichia coli K-12 MG1655 		Oct 2013
Gene Ontology
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001395
Reference: Escherichia coli K-12 MG1655 		Apr 2008
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003844 ydjG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004206 ydjG CDS
Automated Process Uncurated Go view OrthoMCL (42 Serratia) BEZ-0002617 ydjG CDS
Automated Process Uncurated Go view OrthoMCL (UW draft) CQJ-0003918 ydjG CDS
Ortholog
Automated Process Uncurated Go view Citrobacter freundii ATCC 8090 [T] AVI-0002589 iolS_2 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007822 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0001731 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0010350 CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0001680 ydjG CDS
Automated Process Approved Go view Escherichia coli ATCC 11775 [T] AMC-0002619 CDS
Person Uncurated Go view Escherichia coli ATCC 8739 AEM-0007552 ydjG pseudogene
Person Approved Go view Escherichia coli CFT073 (UPEC) ABR-0078294 ydjG CDS
Automated Process Uncurated Go view Escherichia coli DEC7E (UM-IGS draft) CFX-0001987 yhdN CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007295 CDS
Automated Process Approved Go view Escherichia coli E2348/69 (EPEC) BCI-0002018 ydjG CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0006432 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0006288 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0005881 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0010182 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0008742 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007519 CDS
Automated Process Approved Go view Escherichia coli EC4115 (EHEC) BAS-0007335 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007563 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0010772 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008719 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0010163 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007733 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008781 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008487 CDS
Person Approved Go view Escherichia coli EDL933 (EHEC) ABH-0026564 ydjG CDS
Automated Process Approved Go view Escherichia coli F11 (UPEC) ADQ-0006688 yhdN_1 CDS
Automated Process Approved Go view Escherichia coli HS ADR-0006530 CDS
Automated Process Uncurated Go view Escherichia coli J96 (UPEC) CQK-0002176 CDS
Person Uncurated Go view Escherichia coli K-12 DH10B AEC-0001667 ydjG CDS
Person Approved Go view Escherichia coli K-12 W3110 ADY-0001818 ydjG CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR68 CGA-0002295 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR71 CGB-0002135 CDS
Automated Process Uncurated Go view Escherichia coli MOD1-ECOR8 CFZ-0002131 CDS
Automated Process Uncurated Go view Escherichia coli Nissle 1917 AML-0001982 CDS
Automated Process Uncurated Go view Escherichia coli RS218 (NMEC) ACK-0176139 CDS
Automated Process Approved Go view Escherichia coli SE11 AFS-0001973 CDS
Automated Process Approved Go view Escherichia coli SMS-3-5 AFT-0001419 CDS
Person Approved Go view Escherichia coli Sakai (EHEC) ACA-0132464 ydjG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004090 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0001974 ydjG CDS
Person Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001536 ydjG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0006325 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0005720 CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0005534 CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008265 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0007545 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004884 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007532 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0008127 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006102 CDS
Person Approved Go view Shigella flexneri 2457T ABQ-0072643 CDS
Person Approved Go view Shigella flexneri 301 ABT-0087775 CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0001536 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 43003 APO-0012141 CDS
Automated Process Uncurated Go view Yokenella regensburgei ATCC 49455 [T] AMG-0004196 CDS
Experimental to toptop
SelectSetNameSetDetailsNotes
stringent responsetranscriptional profile of the stringent responseNone
Recombinant heat-shock dataexpression data for recombinant strain under heat shockThese data are from the Harcum laboratory. (Jeremy Glasner)
Suppressor tRNA expressionexperiment comparing transcript levels in cells with and without suppressor tRNA expressionThese data were reported in the paper: Herring and Blattner. 2004. Global transcriptional effects of a suppressor tRNA and the inactivation of the regulator frmR. J. Bacteriol. 186(20):6714-20. Link to Abstract (Jeremy Glasner)
Recombinant E. coli expressionexperiment comparing expression of wild-type E. coli with the same strain harboring a plasmid that expresses protein when induced with IPTG These data were reported in the paper: F. T. Haddadin, S. W. Harcum (2005) Transcriptome profiles for high-cell-density recombinant and wild-type Escherichia coli, Biotechnology and Bioengineering, 90:127-153. Link to Abstract (Jeremy Glasner)
Aerobic shiftAerobic shiftThese data were reported in the paper: Covert MW, Knight EM, Reed JL, Herrgard MJ, Palsson BO. 2004. Integrating high-throughput and computational data elucidates bacterial networks. Nature. 2004 May 6;429(6987):92-6. Link to Abstract (Jeremy Glasner)
CalibratorCalibrated microarray experiments (50 hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
AffyData1Affymetrix Experiments (data from 41 chip hybridizations)This data was used in the paper: Allen et al., J. Bacteriol. 185(21):6392-9 (Jeremy Glasner)
Strains to toptop

Strains with mutations in this feature.

Strain NameStrain TypeStrain InformationStrain RequestFeatureIDNameMutation DetailsExperiments Using StrainSubmitter
FB22723mutantTn5 InsertionRequest the StrainABE-0005901ydjGb1771::Tn5KAN-I-SceI at position 174 in Minus orientation ,+ pKD460Blattner Laboratory
FB23147mutantTn5 InsertionRequest the StrainABE-0005901ydjGb1771::Tn5KAN-I-SceI at position 174 in Minus orientation ,- pKD465Tim Durfee (durf@genome.wisc.edu)
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1849991 to 1860971
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
ABE-0000001sourceforward14641652Contains
ABE-0005880sppACDSforward18488371850693Downstream
ABE-0005886ansACDSforward18508601851876Downstream
ABE-0285734matS22protein_bindforward18511991851211Downstream
ABE-0005891pncACDSforward18518871852528Downstream
ABE-0285467repeat_regionforward18525621852597Downstream
ABE-0005894ydjECDScomplement18526211853979Downstream
ABE-0005897ydjFCDScomplement18540961854854Downstream
ABE-0005901ydjGCDScomplement18549911855971Matches
ABE-0005903ydjHCDScomplement18559811856928Upstream
ABE-0005906ydjICDScomplement18569331857769Upstream
ABE-0005908ydjJCDScomplement18577901858833Upstream
ABE-0005910ydjKCDScomplement18588501860229Upstream
ABE-0005912ydjLCDScomplement18602561861332Upstream
Release Notes to toptop
All MG1655 annotations and sequence data are publicly available, and investigators can use these data in publications without contacting the genome curators. This version of the sequence was the source of GenBank record U00096.3. Ongoing annotation updates to that GenBank record are being generated from a collaboration that includes ASAP, EcoGene, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot.